View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10671_low_14 (Length: 365)
Name: NF10671_low_14
Description: NF10671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10671_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 54157319 - 54157101
Alignment:
| Q |
18 |
ctttctctctcaactgcattattgcagacgttgttgtaagtattccttttcattctttagatttccgttatttaaccgcaaactattttgtttttccatt |
117 |
Q |
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| T |
54157319 |
ctttctctctcaactgcattattgcagacgttgttgtaagtattccttttcattctttagatttccgttatttaaccgcaaactattttgcttttccatt |
54157220 |
T |
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| Q |
118 |
tcgaatctctctctcnnnnnnncttattaacctctaattaaattaataattcttatcaatttgcctttttcttctgtctaggtatggattactagtacac |
217 |
Q |
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| T |
54157219 |
tcgaatctctcttt---tttttcttattaacctctaattaaattaataattc-tatcaattttcctttttgttctgtctaggtatggattact--cacac |
54157126 |
T |
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| Q |
218 |
tcattcatttacactgatttacctt |
242 |
Q |
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| T |
54157125 |
tcattcatttacactgatttacctt |
54157101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 279 - 365
Target Start/End: Complemental strand, 54157099 - 54157013
Alignment:
| Q |
279 |
ttgttattattgttatgaacataatgtttcgtttcatttaatatttccaatttcaccatttctatcaatttcccctcaggatctgga |
365 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54157099 |
ttgttattattgttatgaacataatgtctcgtttcatttaatatttccaatttcaccatttctatcaatttcccctcaggatctgga |
54157013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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