View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10671_low_15 (Length: 364)
Name: NF10671_low_15
Description: NF10671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10671_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 18 - 358
Target Start/End: Complemental strand, 32725691 - 32725351
Alignment:
| Q |
18 |
atggactcacttcatcattattcagcggtttttgattcattggaggctggttttccgatgcagaaccgggcccggactttggtggagagggtattttttg |
117 |
Q |
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| T |
32725691 |
atggactcacttcatcattattcagcggtttttgattcattggaggctggttttccgatgcagaaccgggcccggactttggtggagagggtattttttg |
32725592 |
T |
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| Q |
118 |
ggcctagaattgcaggctcgttgggccggatatatagaacgggtggtgaagaggagagaaggtcatggggggagtggttaggtgaggtagggtttagggg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32725591 |
ggcctagaattgcaggctcgttgggccggatatatagaacgggtggtgaagaggagagaaggtcatggggggagtggttaggtgaggtagggtttagggg |
32725492 |
T |
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| Q |
218 |
agttccggtgagctttgcaaatcattgtcaagcgaagctgttgttagggctttttaatgatgggtatagggttgaagaggtgggtgtgggtagtaataag |
317 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32725491 |
agttccggtgagctttgcaaatcattgtcaagcaaagctgttgttagggctttttaatgatgggtatagggttgaagaggtgggtgtgggtagtaataag |
32725392 |
T |
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| Q |
318 |
ttggtgttggattggaaatcaagacgtttgctctctgcttc |
358 |
Q |
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| T |
32725391 |
ttggtgttggattggaaatcaagacgtttgctttctgcttc |
32725351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 359
Target Start/End: Complemental strand, 24256537 - 24256367
Alignment:
| Q |
183 |
tggggggagtggttaggtgaggtagggtttaggggagttccggtgagctttgcaaatcattgtcaagcgaagctgttgttagggctttttaatgatgggt |
282 |
Q |
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| T |
24256537 |
tggggggagtggttgggtgtggaagggttcagaggagttaacataagctatggtaaccattgtcaagcaaagttgttattgggtttatttaacgatgggt |
24256438 |
T |
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| Q |
283 |
atagggttgaagaggtgggtgtgggtagtaataagttggtgttggattggaaatcaagacgtttgctctctgcttct |
359 |
Q |
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||||||| |||||| ||||| | |||||||||||||| | ||||||||||||||||||||| ||||||||| |
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| T |
24256437 |
atagggtggaagagttgggt------aacaataagttggtgttaggttggaaatcaagacgtttgctttctgcttct |
24256367 |
T |
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