View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10671_low_16 (Length: 350)
Name: NF10671_low_16
Description: NF10671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10671_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 21 - 343
Target Start/End: Complemental strand, 29146926 - 29146596
Alignment:
| Q |
21 |
ttacacatatttcagaatacatgtaaatatcaattatatttaacaacaaaattttgaggtcaaaatatcattttcaatatagaaaccaattgaaaccta- |
119 |
Q |
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| T |
29146926 |
ttacacatatatcagaatacatgtaaatatcaattatatttaacaacaaaatttggaggtcaaaatatcattttcaatatagaaaccaattgaaacctag |
29146827 |
T |
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| Q |
120 |
--ttgttnnnnnnngtgatttaccaaaaataaaaagtatcacaccacaatagtaaaaattgaagtccatagttcaacttgaa-cataatactatcaataa |
216 |
Q |
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| T |
29146826 |
tattgttaaaaaaagtgatttaccaaaaataaaaagtatcacaccacaataataaaaattgaagtccatagttcaacttgaaacataatactatcaataa |
29146727 |
T |
|
| Q |
217 |
ttttgtaataattctttaatcaccttatatttcctacccaatgttcatcatggacatctctttgcttatcattggtttcatgttatt----attatatta |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |
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| T |
29146726 |
ttttgtaataattctttaatcaccttatatttcctacccaatgttcatcatggacatctctttgcttaccattggtttcatgttattattaattatatta |
29146627 |
T |
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| Q |
313 |
ttttagtttagttaatatatcgtctctgctt |
343 |
Q |
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||||||||||||||||||||||||| ||||| |
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| T |
29146626 |
ttttagtttagttaatatatcgtctttgctt |
29146596 |
T |
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