View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10671_low_17 (Length: 345)
Name: NF10671_low_17
Description: NF10671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10671_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 17 - 245
Target Start/End: Complemental strand, 32789781 - 32789553
Alignment:
| Q |
17 |
aggaagtacccgaatggatctagaacgaatcgtgcaaccaaatctggatattggaaggcaactgggaaggatcgaaaggtgaattctcaagctcgagcag |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32789781 |
aggaagtacccgaatggatctagaacgaatcgtgcaaccaaatctggatattggaaggcaactgggaaggatcgaaaggtgaattctcaagctcgagcag |
32789682 |
T |
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| Q |
117 |
taggggtgaagaaaaccctagtttactatcgaggaagagcaccccatggctctcgtacaaattgggttatgcatgaatatcgacttgatgagagggaatg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32789681 |
taggggtgaagaaaaccctagtttactatcgaggaagagcaccccatggctctcgtacaaattgggttatgcatgaatatcgacttgatgagagggaatg |
32789582 |
T |
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| Q |
217 |
tgaaaccactcctagtttgcaggttctcc |
245 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
32789581 |
tgaaaccactcctagtttgcaggttctcc |
32789553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 17 - 219
Target Start/End: Original strand, 29103037 - 29103239
Alignment:
| Q |
17 |
aggaagtacccgaatggatctagaacgaatcgtgcaaccaaatctggatattggaaggcaactgggaaggatcgaaaggtgaattctcaagctcgagcag |
116 |
Q |
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|||||||| || |||||||| ||||| ||| | ||||| ||||||||||||||||||||||| ||||| ||||| ||||||||| |||| |||| || | |
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| T |
29103037 |
aggaagtatccaaatggatcaagaaccaatagagcaacaaaatctggatattggaaggcaacggggaaagatcgcaaggtgaatgctcagactcgcgccg |
29103136 |
T |
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| Q |
117 |
taggggtgaagaaaaccctagtttactatcgaggaagagcaccccatggctctcgtacaaattgggttatgcatgaatatcgacttgatgagagggaatg |
216 |
Q |
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| || ||||||||||||||||||||||| ||||||||||||| ||||| ||||| || ||||||||||||||| ||||| |||||||| || ||||| |
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| T |
29103137 |
ttggaatgaagaaaaccctagtttactatagaggaagagcaccacatggatctcgcactggttgggttatgcatgagtatcgtcttgatgaaagagaatg |
29103236 |
T |
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| Q |
217 |
tga |
219 |
Q |
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||| |
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| T |
29103237 |
tga |
29103239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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