View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10671_low_20 (Length: 338)
Name: NF10671_low_20
Description: NF10671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10671_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 84; Significance: 7e-40; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 637744 - 637557
Alignment:
| Q |
1 |
ctatattatttgtttaaatctcaggtgaagtgttcaagagggccttacaatcacaacaagtgtaagtctaattttgtttcaatttag--ttgtgttgatt |
98 |
Q |
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| T |
637744 |
ctatattttttgtttaaatctcaggtgaagtgttcaaaagggccttacaatcacaacaaatgtaagtctaattttgcttcaatttagttttgtgttgatt |
637645 |
T |
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| Q |
99 |
caattcag-nnnnnnnnnnnnnnngttcataccttttgatttatatcaagtgaagtgccactaaaaaatgaattcactttctaaatgt |
185 |
Q |
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| T |
637644 |
caattcagtttttgtttcatttttattcataccttgtgatttatattaggtgaagtgccacaaaaaaatgaattcattttctaaatgt |
637557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 270
Target Start/End: Complemental strand, 637038 - 636998
Alignment:
| Q |
230 |
ttagatttgagattaatggttcaatgattattttgttatag |
270 |
Q |
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| T |
637038 |
ttagatttgagattaatggctgaatgattattttgttatag |
636998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 4 - 84
Target Start/End: Complemental strand, 30254963 - 30254883
Alignment:
| Q |
4 |
tattatttgtttaaatctcaggtgaagtgttcaagagggccttacaatcacaacaagtgtaagtctaattttgtttcaatt |
84 |
Q |
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| T |
30254963 |
tattttttgtttaaatctcaggtgatgtactcaagaggcctttacaatcacaccaagtgtaagtctgattttacttcaatt |
30254883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 270
Target Start/End: Original strand, 5525011 - 5525051
Alignment:
| Q |
230 |
ttagatttgagattaatggttcaatgattattttgttatag |
270 |
Q |
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| T |
5525011 |
ttagatttgagattaatggttgaatgtttattttgttatag |
5525051 |
T |
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