View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10671_low_21 (Length: 337)
Name: NF10671_low_21
Description: NF10671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10671_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 11 - 227
Target Start/End: Original strand, 33278113 - 33278329
Alignment:
| Q |
11 |
cacagataacctaatgtcaattaaattgttcaactttaacaaaggtgtatcatatacaaattacataacatagtagacaagaagaaaaatgtaccaagat |
110 |
Q |
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| T |
33278113 |
cacacataacctaatgtcaattaaattgttcaactttaacaaaggtgtatcatatacaaattacataacatagtagacaagaagaaaaatgtaccaagat |
33278212 |
T |
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| Q |
111 |
attctttcccctcctgaatggatccttgaaaattgcttgaggactgttataaaaacaatatcaattagaaaagcttatgaatggtattaatgctaaatgt |
210 |
Q |
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| T |
33278213 |
attctttcccctcctgaatggatccttgaaaattgcttgaggactgttataaaaacaatatcaattagaaaagcttatgaatggtattaatgctaaatga |
33278312 |
T |
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| Q |
211 |
attcaaggggaatggta |
227 |
Q |
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| T |
33278313 |
atccaaggttaatggta |
33278329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 225 - 323
Target Start/End: Original strand, 33278384 - 33278482
Alignment:
| Q |
225 |
gtaataaaaattacagaaagtaaagagacttactgcaagatcacttcactatcatctccagaagcttgaccagtgctggaaccatcatagttccacttg |
323 |
Q |
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| T |
33278384 |
gtaataaaaattacaaaaagtaaagaggcttactgcaagatcacttcactatcatctccagaagcttgaccagtgctggaaccatcatagttccacttg |
33278482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 267 - 323
Target Start/End: Original strand, 29443326 - 29443382
Alignment:
| Q |
267 |
acttcactatcatctccagaagcttgaccagtgctggaaccatcatagttccacttg |
323 |
Q |
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| T |
29443326 |
acttcactatcttctccaggagcttgacctgtgctggaaccatcatagttccacttg |
29443382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 102 - 149
Target Start/End: Original strand, 29443147 - 29443194
Alignment:
| Q |
102 |
taccaagatattctttcccctcctgaatggatccttgaaaattgcttg |
149 |
Q |
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| T |
29443147 |
taccaagatattgttaccccttctgaatggatccttgaaaatggcttg |
29443194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 263 - 322
Target Start/End: Original strand, 7204915 - 7204974
Alignment:
| Q |
263 |
gatcacttcactatcatctccagaagcttgaccagtgctggaaccatcatagttccactt |
322 |
Q |
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| T |
7204915 |
gatcacttcactatcttcaccaggggcttgtccagtgctagaaccatcgtagttccactt |
7204974 |
T |
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