View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10671_low_22 (Length: 331)
Name: NF10671_low_22
Description: NF10671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10671_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 38217900 - 38217576
Alignment:
| Q |
1 |
tcaacttatagttgtgacctctcacatgaattcaaacatataaaggtcaagagctagacagaccactaggcagaggcagtcaagcaaaagcaaattgaga |
100 |
Q |
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| T |
38217900 |
tcaacttatagttgtgacctctcacatgaattcaaacatataaaggtcaagagctagacagaccactaggcagaggcagtcaagcaaaagcaaattgaga |
38217801 |
T |
|
| Q |
101 |
taaatatcttatctggttgataagtgaaaaagctattctcattaacaacacaaaagaatgtcataccattttcagaaagcacactccacggtttgcatgg |
200 |
Q |
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| T |
38217800 |
taaatatcttatctggttgataagtgaaaaagctattctcattaacaacacaaaagaatgtcataccattttcagaaagcacactccacggtttgcatgg |
38217701 |
T |
|
| Q |
201 |
catattgagcgtatttccacagaggaaggcatgtctggcgcagcttctaaagcaagttcatattgtgttaatgcctcctcatactttgcatctacaaaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38217700 |
catattgagcgtatttccacagaggaaggcatgtctggcgcaacttctaaagcaagttcatattgtgttaatgcctcctcatactttgcatctacaaaaa |
38217601 |
T |
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| Q |
301 |
gtttgttcccttctacctttgcttc |
325 |
Q |
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| T |
38217600 |
gtttgttcccttctacctttgcttc |
38217576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 152 - 325
Target Start/End: Original strand, 21364217 - 21364390
Alignment:
| Q |
152 |
aaaagaatgtcataccattttcagaaagcacactccacggtttgcatggcatattgagcgtatttccacagaggaaggcatgtctggcgcagcttctaaa |
251 |
Q |
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||||||| | ||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||| |
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| T |
21364217 |
aaaagaaggccataccagtttcataaagcacaccgcacggtttgcatggcatattgagcgtatttccacagatgaaggcatgtctggcgcaacttgtaaa |
21364316 |
T |
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| Q |
252 |
gcaagttcatattgtgttaatgcctcctcatactttgcatctacaaaaagtttgttcccttctacctttgcttc |
325 |
Q |
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| T |
21364317 |
gcatgctcatattgcgataaagcctcctcatacttcccatctacaaaaagtttgttaccttctacttttgcttc |
21364390 |
T |
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