View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10671_low_23 (Length: 324)

Name: NF10671_low_23
Description: NF10671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10671_low_23
NF10671_low_23
[»] chr6 (3 HSPs)
chr6 (18-314)||(24069993-24070289)
chr6 (18-314)||(24080447-24080743)
chr6 (40-151)||(30399643-30399754)
[»] chr3 (7 HSPs)
chr3 (18-302)||(28573301-28573593)
chr3 (20-314)||(28566558-28566859)
chr3 (20-302)||(28584533-28584822)
chr3 (18-314)||(26314448-26314747)
chr3 (209-298)||(20615835-20615924)
chr3 (18-111)||(20615221-20615314)
chr3 (40-96)||(21642346-21642402)
[»] scaffold0927 (1 HSPs)
scaffold0927 (19-314)||(91-396)
[»] chr2 (4 HSPs)
chr2 (36-142)||(2603039-2603145)
chr2 (38-151)||(2591749-2591859)
chr2 (40-151)||(2599882-2599991)
chr2 (213-280)||(2602794-2602861)


Alignment Details
Target: chr6 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 18 - 314
Target Start/End: Original strand, 24069993 - 24070289
Alignment:
Q  18 ctttgcacctcttcgccggaaatatcttggtgttcactcatgaagcaatcaagatatgacccatcaagaccattttgatctccactctgcattcatccat 117  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  24069993 ctttgcacctcttcgccggaaatatcttggtgttcactcttgaagcaatcaagatatgacccatcaagaccattttgatcaccactctgcattcatccat 24070092  T
Q  118 ggataataattcttatcattagaactttacatttga-agttgagttaattggtagaacagtataatcatccaagatatatttgggagacatatttcttac 216  Q
    |||||||||||||||||||||||||||||||||| | |||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  24070093 ggataataattcttatcattagaactttacatttaacagttgagt-aatcggtagaacaatataatcatccaagatatatttgggagacatatttcttac 24070191  T
Q  217 cttagctccttctaaatcatcagagagacgaagaattttcgccaccgaatatatgaaatttggaaatttttcatccaagatatcaactgtctcctttg 314  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  24070192 cttagctccttctaaatcatcagagagacgaagaatttttgccaccgaatatatgacatttggaaatttttcatccaagatatcaactgtctcctttg 24070289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 18 - 314
Target Start/End: Complemental strand, 24080743 - 24080447
Alignment:
Q  18 ctttgcacctcttcgccggaaatatcttggtgttcactcatgaagcaatcaagatatgacccatcaagaccattttgatctccactctgcattcatccat 117  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  24080743 ctttgcacgtcttccccggaaatatcttggtgttcactcatgaagcaatcaagatatgacccatcaagaccattttgatctccactctacattcatccat 24080644  T
Q  118 ggataataattcttatcattagaactttacatttga-agttgagttaattggtagaacagtataatcatccaagatatatttgggagacatatttcttac 216  Q
    |||||||||||||||||||||||||||||||||| | |||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  24080643 ggataataattcttatcattagaactttacatttaacagttgagt-aatcggtagaacaatataatcatccaagatatatttgggagacatatttcttac 24080545  T
Q  217 cttagctccttctaaatcatcagagagacgaagaattttcgccaccgaatatatgaaatttggaaatttttcatccaagatatcaactgtctcctttg 314  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  24080544 cttagctccttctaaatcatcagagagacgaagaatttttgccaccgaatatatgacatttggaaaattttcatccaagatatcaactgtctcctttg 24080447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 40 - 151
Target Start/End: Complemental strand, 30399754 - 30399643
Alignment:
Q  40 tatcttggtgttcactcatgaagcaatcaagatatgacccatcaagaccattttgatctccactctgcattcatccatggataataattcttatcattag 139  Q
    |||||||||||||| ||||| |  ||||||||||||| ||||||||||||||||||| |  ||||||||||||| ||||||||||||||| |||||||||    
T  30399754 tatcttggtgttcattcatgtaataatcaagatatgatccatcaagaccattttgatatatactctgcattcatgcatggataataattcatatcattag 30399655  T
Q  140 aactttacattt 151  Q
    ||| | ||||||    
T  30399654 aacatgacattt 30399643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 165; Significance: 3e-88; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 18 - 302
Target Start/End: Original strand, 28573301 - 28573593
Alignment:
Q  18 ctttgcacctcttcgccggaaatatcttggtgttcactcatgaagcaatcaagatatgacccatcaagaccattttgatctccactctgcattcatccat 117  Q
    |||||||| ||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||    
T  28573301 ctttgcacgtcttcaccggaaatatcttggtgttcactcatgtagcaatcaaggtatgacccatcaagaccattttgctctccactctgcattcattcat 28573400  T
Q  118 ggataataattcttatcattagaactttacatttga-agttgagttaattggtagaacagtataatca--------tccaagatatatttgggagacata 208  Q
    |||||||||||||||||||||||||||||||||| | | ||| |||||||||| ||||| | ||||||        |  || ||| |||| |||||||||    
T  28573401 ggataataattcttatcattagaactttacattttacaattgcgttaattggttgaacaatttaatcaaatatttgtttaatata-atttaggagacata 28573499  T
Q  209 tttcttaccttagctccttctaaatcatcagagagacgaagaattttcgccaccgaatatatgaaatttggaaatttttcatccaagatatcaa 302  Q
    |||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||| |||||||||||||||||||    
T  28573500 tttcataccttagctccttctaaatcatcagagagacgaagaatttttgccactgaatatatgacatttggaaacttttcatccaagatatcaa 28573593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 20 - 314
Target Start/End: Original strand, 28566558 - 28566859
Alignment:
Q  20 ttgcacctcttcgccggaaatatcttggtgttcactcatgaagcaatcaagatatgacccatcaagaccattttgatctccactctgcattcatccatgg 119  Q
    |||||| ||||| | ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||     
T  28566558 ttgcacgtcttcactggaaatatcttggtgttcactcatgtagcaatcaaggtatgacccatcaagaccattttgatctccactctgcattcatccatg- 28566656  T
Q  120 ataataattcttatcattagaactttacatttga-agttgagttaattggtagaacagtataatc--atccaag----atat----atttgggagacata 208  Q
       |||| |||||||||||||||||||||||| | | | ||||||| |||| ||||| | |||||  || |  |    ||||    |||| |||||||||    
T  28566657 ---ataactcttatcattagaactttacatttaacaatcgagttaagtggttgaacaatttaatcgaatacttgtttaatattctaatttaggagacata 28566753  T
Q  209 tttcttaccttagctccttctaaatcatcagagagacgaagaattttcgccaccgaatatatgaaatttggaaatttttcatccaagatatcaactgtct 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| | |||||| || ||||||||||||||||||| |||||    
T  28566754 tttcttaccttagctccttctaaatcatcagagagacgaagaatttttgccactgaatatataacatttgggaaattttcatccaagatatcaattgtct 28566853  T
Q  309 cctttg 314  Q
    ||||||    
T  28566854 cctttg 28566859  T

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Target: chr3; HSP #3
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 20 - 302
Target Start/End: Original strand, 28584533 - 28584822
Alignment:
Q  20 ttgcacctcttcgccggaaatatcttggtgttcactcatgaagcaatcaagatatgacccatcaagaccattttgatctccactctgcattcatccatgg 119  Q
    |||||| ||||| | ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||     
T  28584533 ttgcacgtcttcactggaaatatcttggtgttcactcatgtagcaatcaaggtatgacccatcaagaccattttgatctccactctgcattcatccatg- 28584631  T
Q  120 ataataattcttatcattagaactttacatttga-agttgagttaattggtagaacagtataatc--atccaag----atat----atttgggagacata 208  Q
       ||||||||||||||||||||||||||||| | | | ||||||| |||| ||||| | |||||  || |  |    ||||    |||| |||||||||    
T  28584632 ---ataattcttatcattagaactttacatttaacaatcgagttaagtggttgaacaatttaatcgaatacttgtttaatattctaatttaggagacata 28584728  T
Q  209 tttcttaccttagctccttctaaatcatcagagagacgaagaattttcgccaccgaatatatgaaatttggaaatttttcatccaagatatcaa 302  Q
    |||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||| |||||||||||||||||||    
T  28584729 tttcataccttagctccttctaaatcatcagagagacgaagaatttttgccactgaatatatgacatttggaaacttttcatccaagatatcaa 28584822  T

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Target: chr3; HSP #4
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 18 - 314
Target Start/End: Original strand, 26314448 - 26314747
Alignment:
Q  18 ctttgcacctcttcgccggaaatatcttggtgttcactcatgaagcaatcaagatatgacccatcaagaccattttgatctccactctgcattcatccat 117  Q
    |||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||  ||    
T  26314448 ctttgcacgtcttcaccggaaatatcttggtgttcactcatgtagcaatcaagatatgaaccatcaagaccattttgatctccactctgcaatcatg-at 26314546  T
Q  118 ggataataattcttatcattagaactttacatttga-agttgagttaattggtagaacagtataatca--tccaagat--at------atttgggagaca 206  Q
    ||       ||||||| ||||||||||||||||| | | |||||||||||||| ||||| | ||||||  | |  | |  ||      |||| |||||||    
T  26314547 gg-------ttcttataattagaactttacatttaacaattgagttaattggttgaacaatttaatcaaatacttgtttaattttctaatttaggagaca 26314639  T
Q  207 tatttcttaccttagctccttctaaatcatcagagagacgaagaattttcgccaccgaatatatgaaatttggaaatttttcatccaagatatcaactgt 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||| |||    
T  26314640 tatttcttaccttagctccttctaaatcatcagagagacgaagaattttcgccactgaatatatgacatttgggaatttttcatccaagatatcaattgt 26314739  T

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Target: chr3; HSP #5
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 209 - 298
Target Start/End: Original strand, 20615835 - 20615924
Alignment:
Q  209 tttcttaccttagctccttctaaatcatcagagagacgaagaattttcgccaccgaatatatgaaatttggaaatttttcatccaagata 298  Q
    |||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||| |||| ||||||||||| |||||| ||||||    
T  20615835 tttcttaccttaactccttctaaatcatcagagagacgaagaatttttgccactgaataaatgatatttggaaattcttcatctaagata 20615924  T

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Target: chr3; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 20615221 - 20615314
Alignment:
Q  18 ctttgcacctcttcgccggaaatatcttggtgttcactcatgaagcaatcaagatatgacccatcaagaccattttgatctccactctgcattc 111  Q
    |||||||| ||||| |  |||||||||||||| ||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||| ||||    
T  20615221 ctttgcacatcttcacatgaaatatcttggtgctcactcatgtagcaattaagatatgatccatcaagaccattttgatctccactctgtattc 20615314  T

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Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 96
Target Start/End: Original strand, 21642346 - 21642402
Alignment:
Q  40 tatcttggtgttcactcatgaagcaatcaagatatgacccatcaagaccattttgat 96  Q
    |||||||||||||| ||||| | |||||||||||||| ||||||||||| |||||||    
T  21642346 tatcttggtgttcattcatgtaacaatcaagatatgatccatcaagaccgttttgat 21642402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0927 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: scaffold0927
Description:

Target: scaffold0927; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 19 - 314
Target Start/End: Complemental strand, 396 - 91
Alignment:
Q  19 tttgcacctcttcgccggaaatatcttggtgttcactcatgaagcaatcaagatatgacccatcaagaccattttgatctccactctgcattcatccatg 118  Q
    ||||||| ||||| | ||||||||| || |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||     
T  396 tttgcacgtcttcactggaaatatcctgatgttcactcatgtagcaatcaagatatgacccgtcaagaccattttgatctccactctgcattcattcatt 297  T
Q  119 gataataattcttatcattagaactttacatttga-agttgagttaattggtagaacagtataatca--------tccaagatat-atttgggagacata 208  Q
    ||||||||||||||||||||||||||||||||| | | ||| |||||||||| ||||| | ||||||        |  ||  | | ||||  |||| |||    
T  296 gataataattcttatcattagaactttacattttacaattgtgttaattggttgaacaatttaatcaaatacttgtttaaattctaatttatgagatata 197  T
Q  209 tttcttaccttagctccttctaaatcatcagagagacgaagaattttcgccaccgaatatatgaaatttggaaatttttcatccaagatatcaactgtct 308  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||| | ||||||||| ||||||||||||||||||  |||||    
T  196 tttcttaccttagctccttctaaatcatcagcgagacgaagaatttttgccactgaatatataacatttggaaaattttcatccaagatatcagttgtct 97  T
Q  309 cctttg 314  Q
    ||||||    
T  96 cctttg 91  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 6e-25; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 36 - 142
Target Start/End: Complemental strand, 2603145 - 2603039
Alignment:
Q  36 gaaatatcttggtgttcactcatgaagcaatcaagatatgacccatcaagaccattttgatctccactctgcattcatccatggataataattcttatca 135  Q
    ||||| |||||||||||| ||||| ||||||| |||||||||||||||||||| ||||||||| |||||||||||||  ||| |||||||| || ||| |    
T  2603145 gaaatctcttggtgttcattcatgtagcaatctagatatgacccatcaagaccgttttgatctacactctgcattcacgcatagataataaatcatataa 2603046  T
Q  136 ttagaac 142  Q
    |||||||    
T  2603045 ttagaac 2603039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 38 - 151
Target Start/End: Complemental strand, 2591859 - 2591749
Alignment:
Q  38 aatatcttggtgttcactcatgaagcaatcaagatatgacccatcaagaccattttgatctccactctgcattcatccatggataataattcttatcatt 137  Q
    ||||| |||||||||| ||||| | |||||||||||||| ||||||||||| |||||||||  |||||| ||   | |||||| |||||||| ||| |||    
T  2591859 aatattttggtgttcattcatgtaacaatcaagatatgatccatcaagaccgttttgatctaaactctgtat---tgcatggacaataattcatataatt 2591763  T
Q  138 agaactttacattt 151  Q
    ||||| | ||||||    
T  2591762 agaacatgacattt 2591749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 40 - 151
Target Start/End: Complemental strand, 2599991 - 2599882
Alignment:
Q  40 tatcttggtgttcactcatgaagcaatcaa-gatatgacccatcaagaccattttgatctccactctgcattcatccatggataataattcttatcatta 138  Q
    |||||||||||||| ||||| | ||||||| ||||||| ||||||||||| |||||||||  |||||||||   | ||| || |||||||| ||||||||    
T  2599991 tatcttggtgttcattcatgtaacaatcaaagatatgatccatcaagaccgttttgatctaaactctgcat---tgcatcgacaataattcatatcatta 2599895  T
Q  139 gaactttacattt 151  Q
    |||| | ||||||    
T  2599894 gaacatgacattt 2599882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 213 - 280
Target Start/End: Complemental strand, 2602861 - 2602794
Alignment:
Q  213 ttaccttagctccttctaaatcatcagagagacgaagaattttcgccaccgaatatatgaaatttgga 280  Q
    |||||||||||||||| ||||||||||| ||||| |||||||| || || ||||| |||  |||||||    
T  2602861 ttaccttagctccttccaaatcatcagaaagacggagaatttttgctactgaatacatggtatttgga 2602794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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