View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10671_low_27 (Length: 312)
Name: NF10671_low_27
Description: NF10671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10671_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 8 - 297
Target Start/End: Original strand, 48770331 - 48770632
Alignment:
| Q |
8 |
gagatgaaagaaacgtacctgagaccgccaccgctgaccggtccatcatctatagcacggacctgacttgttgaggacaaaactgaattgagatatccca |
107 |
Q |
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| T |
48770331 |
gagatgcaagaaacgtacctgagaccgccaccgctgaccggtccatcatctatagcacggacctgacttgttgaggacaaaactgaattgagatatccca |
48770430 |
T |
|
| Q |
108 |
tattacaactacaatatttctctttctttgaccaaaatgatgaaagaaaagcactattgtttatttgattttttcctgccaaggattccaagtgatcata |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
48770431 |
tattacaactacaatatttctctttctttgaccaaaatgatgaaagaaaagcactattgtttatttgattttttcctgccaaggataccaagtgatcata |
48770530 |
T |
|
| Q |
208 |
acattagtgtagggtcattttttgaaatataaacacaaaatttg------------atttaattttgtgtgcataaattttacaattgatatggataatg |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48770531 |
acattagtgtagggtcattttttgaaatataaacacaaaatttgatttaatttttaatttaattttgtgtgcataaattttacaattgatatggataatg |
48770630 |
T |
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| Q |
296 |
gt |
297 |
Q |
| |
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|| |
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| T |
48770631 |
gt |
48770632 |
T |
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