View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10671_low_3 (Length: 477)
Name: NF10671_low_3
Description: NF10671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10671_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 380; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 459
Target Start/End: Complemental strand, 43603402 - 43602926
Alignment:
| Q |
1 |
acaagcaggaaggcaattaacaatagcagcagccaacgaagcagaagtgtaaacaagggcaataccatgcacattcagagctaaagtaattctgaaaagc |
100 |
Q |
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| T |
43603402 |
acaagcaggaaggcaattaacaatagcagcagccaacgaagcagaagtgtaaacaagggcaataccatgcacattcagagctaaagtaattctgaaaagc |
43603303 |
T |
|
| Q |
101 |
aaccaagaaggattacagaaaaaattagtcctaagattct--gtcaaaatagcatttgtttagaaatcacatagagattaaagaataatgataatgtact |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43603302 |
aaccaagaaggattacagaaaaaattagtcctaagattctttgtcaaaatagcatttgtttagaaatcacatagagattaaagaataatgataatgtact |
43603203 |
T |
|
| Q |
199 |
acccaaatagtgaaagcataaaaatcttgaagatggtcttaaatgagaatttcactggcacggcttgtttgctggaccat--------------aaataa |
284 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
43603202 |
acccaaatagtgaaagcataaaaatcttgaagatggtcttaaatgagaatttcactggcacggcttgtttgctggaccatatatataatagaaaaaataa |
43603103 |
T |
|
| Q |
285 |
tgttagcaaattatatatgcacactattgaatgaaaaaaattcaagt--nnnnnnnncagatcatattttcaacaatgttaccgttcaaatatcaaagcc |
382 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |
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| T |
43603102 |
tgttagcaaattatatatgcacactattgaatgaaaaaaattcaagtaaaaaaaaaacagatcatattttcaacattgttaccgttcaaatatcaaagcc |
43603003 |
T |
|
| Q |
383 |
aaagggaccataatcatggctccaatcagttgtctgtagaagacaaacacagaggttttcattccttcgttaaacac |
459 |
Q |
| |
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| T |
43603002 |
aaagggaccataatcatggctccaatcagttgtctgtagaagacaaacacagaggttttcattccttcgttaaacac |
43602926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 3 - 279
Target Start/End: Complemental strand, 43609809 - 43609531
Alignment:
| Q |
3 |
aagcaggaaggcaattaacaatagcagcagccaacgaagcagaagtgtaaacaagggcaataccatgcacattcagagctaaagtaattctgaaaa-gca |
101 |
Q |
| |
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|||| ||||| ||||||||||| ||| ||| || | ||||||||| ||| ||| |||| ||||||||||||||||| |||||||| |||||||| ||| |
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| T |
43609809 |
aagccggaagacaattaacaattgcaccagacagcatagcagaagtataagaaagagcaacaccatgcacattcagagttaaagtaagtctgaaaaagca |
43609710 |
T |
|
| Q |
102 |
accaagaaggattacagaaaaaattagtcctaagattctgt--caaaatagca----tttgtttagaaatcacatagagattaaagaataatgataatgt |
195 |
Q |
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|||||| ||||||| ||| |||||||||||||||||| | ||||||| | || ||| | |||| ||| |||||||| ||||||| ||||| |
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| T |
43609709 |
accaagtaggattatagacctaattagtcctaagattctatatcaaaataataaaatttggttgaaaaataaca--gagattaaggaataat---aatgt |
43609615 |
T |
|
| Q |
196 |
actacccaaatagtgaaagcataaaaatcttgaagatggtcttaaatgagaatttcactggcacggcttgtttgctggaccata |
279 |
Q |
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||||||| |||| |||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||| |||||||||| |
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| T |
43609614 |
actaccccaataatgaaagcataaaaatcttgaagatggtcataaatgagaatgttactggcacggcttgtttcctggaccata |
43609531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 361 - 459
Target Start/End: Complemental strand, 43609459 - 43609361
Alignment:
| Q |
361 |
ttaccgttcaaatatcaaagccaaagggaccataatcatggctccaatcagttgtctgtagaagacaaacacagaggttttcattccttcgttaaacac |
459 |
Q |
| |
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||||| ||||||||| ||||| ||||||||||| || |||||||||||||||||||| || || ||||||||| | |||||||||||| |||||||||| |
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| T |
43609459 |
ttacctttcaaatattaaagctaaagggaccatgataatggctccaatcagttgtctataaaaaacaaacacatatgttttcattcctccgttaaacac |
43609361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 361 - 457
Target Start/End: Complemental strand, 43614770 - 43614674
Alignment:
| Q |
361 |
ttaccgttcaaatatcaaagccaaagggaccataatcatggctccaatcagttgtctgtagaagacaaacacagaggttttcattccttcgttaaac |
457 |
Q |
| |
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||||||||||||||||||| ||||||||||| || |||||||||||||| ||||| || || ||||||||||| |||||||||||| |||||||| |
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| T |
43614770 |
ttaccgttcaaatatcaaaaataaagggaccatgataatggctccaatcagctgtctataaaaaacaaacacagatgttttcattcctccgttaaac |
43614674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 3 - 113
Target Start/End: Complemental strand, 43616354 - 43616244
Alignment:
| Q |
3 |
aagcaggaaggcaattaacaatagcagcagccaacgaagcagaagtgtaaacaagggcaataccatgcacattcagagctaaagtaattctgaaaagcaa |
102 |
Q |
| |
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|||| ||||| || |||||||| |||||||||||| |||||| |||||| |||| |||||||||| |||||||| || ||||||||||||||||| ||| |
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| T |
43616354 |
aagccggaagacagttaacaattgcagcagccaacatagcagacgtgtaagcaagagcaataccattcacattcaaagttaaagtaattctgaaaaacaa |
43616255 |
T |
|
| Q |
103 |
ccaagaaggat |
113 |
Q |
| |
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| ||| ||||| |
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| T |
43616254 |
caaagtaggat |
43616244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 198 - 279
Target Start/End: Complemental strand, 43614923 - 43614842
Alignment:
| Q |
198 |
tacccaaatagtgaaagcataaaaatcttgaagatggtcttaaatgagaatttcactggcacggcttgtttgctggaccata |
279 |
Q |
| |
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||||| |||| ||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||| |||||||||| |
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| T |
43614923 |
taccccaataatgaaagcataaaaatcttgaagatggttataaatgagaatattgctggcacggcttgtttcctggaccata |
43614842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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