View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10671_low_36 (Length: 267)
Name: NF10671_low_36
Description: NF10671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10671_low_36 |
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Alignment Details
Target: chr2 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 3101214 - 3100977
Alignment:
| Q |
19 |
cttatagcataaatgcttatcataaagcatatagagtttatgaaaacaaatggacatgtcatatagtnnnnnnncttgatgaacaacacaatgtaatagt |
118 |
Q |
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| T |
3101214 |
cttatagcataaatgcttatcataaagcatatagagtttatgaaaacaaatggacatgtcatatagtaaaaaaacttgatgaacaacacaatgtaatagt |
3101115 |
T |
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| Q |
119 |
agataaactcaaataaatcaattgaaataagcacatagt----nnnnnnnnnnnnnnncttgcataaaaggcgctactagaacaatactagaaattatga |
214 |
Q |
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| T |
3101114 |
agataaactcaaataaatcaattgaaataagcacatagtaaaaaaaaaaaaaaaaaagcttgcataaaaggcgctactagaacaatactagaaattatga |
3101015 |
T |
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| Q |
215 |
gtaaaagatatactagtaaccact-aagcaatttgatg |
251 |
Q |
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|||||||||||||||||||||||| ||||||||||||| |
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| T |
3101014 |
gtaaaagatatactagtaaccactaaagcaatttgatg |
3100977 |
T |
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