View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10671_low_37 (Length: 261)
Name: NF10671_low_37
Description: NF10671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10671_low_37 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 18 - 261
Target Start/End: Complemental strand, 34240208 - 34239965
Alignment:
| Q |
18 |
catcagtaaatagcatcatctccatttcatctgcttcattgttgaatcgaactcatcaaccaaaaacaacaacacttattagcctccttaaacacaacaa |
117 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34240208 |
catcagcaaatagcatcatctccatttcatctgcttcattgttgaatcgaactcatcaaccaaaaacaacaacacttattagcctccttaaacacaacaa |
34240109 |
T |
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| Q |
118 |
gaaggagcatgaacaacacagtacttcaccatcctctttcactgtcaaagctcttaagatatcaacttcaacaaccagaagacgtaggttgagttgctca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34240108 |
gaaggagcatgaacaacacagtacttcaccatcctctttcactgtcaaagctcttaagatatcaacttcaacaaccagaagacgtaggttgagttgctca |
34240009 |
T |
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| Q |
218 |
gcctcggcttcagcatcttccacgcttccctcagctcttctttt |
261 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34240008 |
gcctcggcttcagcatcttccacgcttccctcagctcttctttt |
34239965 |
T |
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