View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10671_low_39 (Length: 258)
Name: NF10671_low_39
Description: NF10671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10671_low_39 |
 | |
|
| [»] chr6 (3 HSPs) |
| |
|
| [»] chr3 (1 HSPs) |
| |
|
| [»] scaffold0003 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 46 - 258
Target Start/End: Complemental strand, 24491863 - 24491651
Alignment:
| Q |
46 |
tataaggaataatgatatgtaaggaataatgattttttgctatatcattcacaaggtatattggcacaatatatagaaacatatttgctgtcctaataat |
145 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
24491863 |
tataaggaataatgatatgtaaggaataatgattttttgctatatcattcacaaggtatattggcacaatatatagaaacatatttgttgtcctaataat |
24491764 |
T |
|
| Q |
146 |
tgcttcctacagctatggtttgactttctctaatcaattacagtgtgatattatttcttgatcacagaataactctcatcttaaatgcttaataatacta |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
24491763 |
tgcttcctacagctatggtttgactttctctaatcaattacagtgtgatattatttcttgatcacagattaactctcatcttaaatgcttaataatacta |
24491664 |
T |
|
| Q |
246 |
gtatctcttaatt |
258 |
Q |
| |
|
||||||||||||| |
|
|
| T |
24491663 |
gtatctcttaatt |
24491651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 46 - 258
Target Start/End: Complemental strand, 24495421 - 24495209
Alignment:
| Q |
46 |
tataaggaataatgatatgtaaggaataatgattttttgctatatcattcacaaggtatattggcacaatatatagaaacatatttgctgtcctaataat |
145 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
24495421 |
tataaggaataatgatatgtaaggaataatgattttttgctatatcattcacaaggtatattggcacaatatatagaaacatatttgttgtcctaataat |
24495322 |
T |
|
| Q |
146 |
tgcttcctacagctatggtttgactttctctaatcaattacagtgtgatattatttcttgatcacagaataactctcatcttaaatgcttaataatacta |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
24495321 |
tgcttcctacagctatggtttgactttctctaatcaattacagtgtgatattatttcttgatcacagattaactctcatcttaaatgcttaataatacta |
24495222 |
T |
|
| Q |
246 |
gtatctcttaatt |
258 |
Q |
| |
|
||||||||||||| |
|
|
| T |
24495221 |
gtatctcttaatt |
24495209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 94 - 239
Target Start/End: Complemental strand, 2810371 - 2810226
Alignment:
| Q |
94 |
tcacaaggtatattggcacaatatatagaaacatatttgctgtcctaataattgcttcctacagctatggtttgactttctctaatcaattacagtgtga |
193 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2810371 |
tcacaaggtatattggtacaatatatagaaacatatttgttgtcctaataattgcttcctagagctatggtttgactttctctaatcaattacagtgtga |
2810272 |
T |
|
| Q |
194 |
tattatttcttgatcacagaataactctcatcttaaatgcttaata |
239 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||| |||||||||||| |
|
|
| T |
2810271 |
tattatttcttaatcacagaataactctcgtctaaaatgcttaata |
2810226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 46 - 258
Target Start/End: Complemental strand, 24359176 - 24358964
Alignment:
| Q |
46 |
tataaggaataatgatatgtaaggaataatgattttttgctatatcattcacaaggtatattggcacaatatatagaaacatatttgctgtcctaataat |
145 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
24359176 |
tataaggaataatgatatgtaaggaataatgattttttgctatatcattcacaaggtatattggcacaatatatagaaacatatttgttgtcctaataat |
24359077 |
T |
|
| Q |
146 |
tgcttcctacagctatggtttgactttctctaatcaattacagtgtgatattatttcttgatcacagaataactctcatcttaaatgcttaataatacta |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
24359076 |
tgcttcctacagctatggtttgactttctctaatcaattacagtgtgatattatttcttgatcacagattaactctcatcttaaatgcttaataatacta |
24358977 |
T |
|
| Q |
246 |
gtatctcttaatt |
258 |
Q |
| |
|
||||||||||||| |
|
|
| T |
24358976 |
gtatctcttaatt |
24358964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 45 - 239
Target Start/End: Complemental strand, 86922 - 86729
Alignment:
| Q |
45 |
gtataaggaataatgatatgtaaggaataatgattttttgctatatcattcacaaggtatattggcacaatatatagaaacatatttgctgtcctaataa |
144 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
86922 |
gtataaggaataatgatatataaggaataatgattttt-gctatatcattcacaaggtattttggcacaatatatagaaacatatttgctgtcctaataa |
86824 |
T |
|
| Q |
145 |
ttgcttcctacagctatggtttgactttctctaatcaattacagtgtgatattatttcttgatcacagaataactctcatcttaaatgcttaata |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
86823 |
ttgcttcctacagctatggtttgactttctctaatcaattacagtgtgatattatttcttgatcacagaataactctcatcttaaatgcttaata |
86729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 46 - 239
Target Start/End: Original strand, 18556573 - 18556765
Alignment:
| Q |
46 |
tataaggaataatgatatgtaaggaataatgattttttgctatatcattcacaaggtatattggcacaatatatagaaacatatttgctgtcctaataat |
145 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
18556573 |
tataaggaataatgatatgtatggaataatgatttt-tgctatatcattcacaaggtatattggtacaatatatagaaacatatttgctgtcctaataat |
18556671 |
T |
|
| Q |
146 |
tgcttcctacagctatggtttgactttctctaatcaattacagtgtgatattatttcttgatcacagaataactctcatcttaaatgcttaata |
239 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18556672 |
tgcttcctccagctatggtttgactttctctagtcaattatagtgtgatattatttcttgatcacagaataactctcatcttaaatgcttaata |
18556765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University