View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10671_low_41 (Length: 250)
Name: NF10671_low_41
Description: NF10671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10671_low_41 |
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Alignment Details
Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 112 - 244
Target Start/End: Original strand, 22887116 - 22887249
Alignment:
| Q |
112 |
tgttcttattgtctacgaaaatggtagaggtattctatacttagggctttggtcaatttactctcaaattgtttctaacaaactaatgtggtttaaa-tt |
210 |
Q |
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| T |
22887116 |
tgttcttattgtctacaagaatggtaaaggtattctttacctagggctttggtcaatttactctcaaattgtttcaaacaaactaatttggctgaaattt |
22887215 |
T |
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| Q |
211 |
tcttaatttcagggatcactttagaggtatgagt |
244 |
Q |
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| T |
22887216 |
ttttaatttcagggatcattttagaagtatgagt |
22887249 |
T |
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Target: chr7; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 9 - 108
Target Start/End: Original strand, 22838188 - 22838287
Alignment:
| Q |
9 |
tgcaaaccagactcaaatcctcaacaacctttccttgccataaccagggcatcaagaactttacgtattcaatgcctctaatgcaatttggattataatg |
108 |
Q |
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| T |
22838188 |
tgcaaaccatactcaaatcatcaacaacctttccttgccataaccagggcttcaagaattttacgtattcaaagcttcaaaggcaatttggattctaatg |
22838287 |
T |
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Target: chr7; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 22806914 - 22807010
Alignment:
| Q |
1 |
gattctaatgcaaaccagactcaaatcctcaacaacctttccttgccataaccagggcatcaagaactttacgtattcaatgcctctaatgcaattt |
97 |
Q |
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| T |
22806914 |
gattcaaatgcgaaccagagtcaaatcctcaacaacctttccttgccataagcagggcttcaagaactttacatcttcaatgccgcaaatgcaattt |
22807010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 133 - 244
Target Start/End: Original strand, 22807021 - 22807131
Alignment:
| Q |
133 |
tggtagaggtattctatacttagggctttggtcaatttactctcaaattgtttctaacaaactaatgtggtttaaatttcttaatttcagggatcacttt |
232 |
Q |
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| T |
22807021 |
tggtaaaggtattctttacctagggctttggtcagtttactctcaaattgtttcaaacaaactaatgtgg-ttgaattatttaatttcagggatcattta |
22807119 |
T |
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| Q |
233 |
agaggtatgagt |
244 |
Q |
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||| |||||||| |
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| T |
22807120 |
agaagtatgagt |
22807131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 168 - 244
Target Start/End: Complemental strand, 21152692 - 21152616
Alignment:
| Q |
168 |
tttactctcaaattgtttctaacaaactaatgtggtttaaatttcttaatttcagggatcactttagaggtatgagt |
244 |
Q |
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|||| |||||||||||||| ||||||||||||||||| |||||| |||||||||||||||| |||||| |||||||| |
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| T |
21152692 |
tttattctcaaattgtttcaaacaaactaatgtggttgaaattttttaatttcagggatcattttagaagtatgagt |
21152616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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