View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10671_low_43 (Length: 245)
Name: NF10671_low_43
Description: NF10671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10671_low_43 |
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Alignment Details
Target: chr5 (Bit Score: 107; Significance: 9e-54; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 101 - 231
Target Start/End: Original strand, 13712152 - 13712281
Alignment:
| Q |
101 |
ccaatatttttcaattgaagggacaaacaaaccttttcaattctaaggagtttgaagtttgggacagctttgtagcattttcactacctcgtaccacaca |
200 |
Q |
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| T |
13712152 |
ccaatatttttcaattgaagtgacaaacaaacctttacaattcgaag-agtttgaagtttgggacagctttgtagcattttcactacctcgtaccacaca |
13712250 |
T |
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| Q |
201 |
tgtctggcttgaaacaactttagatgaaggt |
231 |
Q |
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| T |
13712251 |
tgtctagcttgaaacaactttagatgaaggt |
13712281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 13712061 - 13712120
Alignment:
| Q |
11 |
cagagacaaaacatgatttttcaaaatacttaaacataatagaataacatataatctttc |
70 |
Q |
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| T |
13712061 |
cagagacaaaacatgatttttcaaaatacttgaacataatagaataacatataatctttc |
13712120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 190
Target Start/End: Complemental strand, 19806970 - 19806903
Alignment:
| Q |
122 |
gacaaacaaaccttttcaattctaaggagtttgaagtttgggacagctttgtagcattttcactacctc |
190 |
Q |
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| T |
19806970 |
gacaaacaaacctttttaattgcaag-agtttggagtttgggacaattttggagcattttcactacctc |
19806903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 190
Target Start/End: Complemental strand, 20112022 - 20111955
Alignment:
| Q |
122 |
gacaaacaaaccttttcaattctaaggagtttgaagtttgggacagctttgtagcattttcactacctc |
190 |
Q |
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| T |
20112022 |
gacaaacaaacctttacaattttaagt-gcttgaagtttgggacatttctggagcattttcactacctc |
20111955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 122 - 190
Target Start/End: Complemental strand, 15784721 - 15784654
Alignment:
| Q |
122 |
gacaaacaaaccttttcaattctaaggagtttgaagtttgggacagctttgtagcattttcactacctc |
190 |
Q |
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| T |
15784721 |
gacaaacagaccttttcaattctaag-agcttgaagttttggacaattctgtagcattttcactacctc |
15784654 |
T |
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