View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10671_low_48 (Length: 239)
Name: NF10671_low_48
Description: NF10671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10671_low_48 |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 3652685 - 3652466
Alignment:
| Q |
1 |
caaatttcatcatcttcttcaaacattgatatcaatacatccatgaaatcatcctcacgcttaccactttgtacttcatctctctttttataatgttcac |
100 |
Q |
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| T |
3652685 |
caaatttcatcatcttcttcaaacattgatatcaatacatccatgaaatcatcctc---cttaccactttgtacttcatctctctttttataatgttcac |
3652589 |
T |
|
| Q |
101 |
tcaaccacttatcaagaatgaaatccatttccttagcagtcctcttcataaaaccaacatggccttgaaaatcaatccaacttaagctaggaatagcatc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
3652588 |
tcaaccacttatcaagaatgaaatccatttccttagcagtcctcttcatgaaaccaacatggccttgaaaatcaatccaacttaggctaggaatagcatc |
3652489 |
T |
|
| Q |
201 |
agccataacaaaaacaccacata |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
3652488 |
agccataacaaaaacaccacata |
3652466 |
T |
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