View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10671_low_5 (Length: 448)
Name: NF10671_low_5
Description: NF10671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10671_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 13 - 437
Target Start/End: Original strand, 5972020 - 5972447
Alignment:
| Q |
13 |
atcataaccaacataagctatgtaaggaagcttnnnnnnnnca----taagctgtgcaaggagatgattgaaaagtaactactacaaacatagtacatga |
108 |
Q |
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||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
5972020 |
atcataaccaacataagctatgtaaggaagcttaaaaaaaaaacatataagctgtgcaaggagatgattgaaaagtaactactacaaacatagcacatga |
5972119 |
T |
|
| Q |
109 |
atcgagataacacaaagcatgtgacaaaactcaaacaaaaaataaggttaagccatcaatatgtaaattaaaacctaaatgcatatgttttgttttcaac |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
5972120 |
atcgagataacacaaagcatgtgacaaaactcaaacaagaaataaggttaagccatcaatatgtaaattaaaccctaaatgcatatgttttgttttcaac |
5972219 |
T |
|
| Q |
209 |
caactaaaaactaaaatttcactttgtctaataattgttgaatcaaaaacttgttacgttaagagtctcacattagatgatagataacctaaacaaatgt |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||| ||| |
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| T |
5972220 |
caactaaaaactaaaatttcactttgtctaataattgttgaatcaaagacttgttacgttaagagtctcacattagatgagagataatctaaacaagtgt |
5972319 |
T |
|
| Q |
309 |
ttctaaatggaggcaaatcatcaccttacaagttagttttgtgcacttgtgttacacccaaacacaaattctaatatcgtatcgaagtctcgtccaagat |
408 |
Q |
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|| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
5972320 |
ttataaatggaggc-aatcatcatcttacaagttagttttgtgcacttgtgttacactcaaacacaaattctaatatcgtatcgaagtctcgtccaagat |
5972418 |
T |
|
| Q |
409 |
ttgttggacccaactgctatcatgttctt |
437 |
Q |
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||||||||||||| ||||||||||||||| |
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| T |
5972419 |
ttgttggacccaagtgctatcatgttctt |
5972447 |
T |
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