View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10671_low_51 (Length: 238)
Name: NF10671_low_51
Description: NF10671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10671_low_51 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 34239800 - 34239578
Alignment:
| Q |
1 |
ataaaagtatagaacaactagcgtgtacaataagacttatatagccgattagaacaactaacttgtgtaactaacttttacatctaaccttagtaatcag |
100 |
Q |
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| T |
34239800 |
ataaaagtatagaacaactagcgtgtacaataagacttatatagccgattagaacaactaacttgtgtaactaacttttacatctaaccttagtaatcag |
34239701 |
T |
|
| Q |
101 |
gtttgaatcctagaactagaatgccttcatcctacctcagccacctacgccttggaactagtatgcaatcgaaagtagtacactaactgagatgctttag |
200 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34239700 |
gtttgaatcctagaactagaatgtcttcatcctacctcagccacctacgccttggaactagtatgcaatcgaaagtagtacactaactgagatgctttag |
34239601 |
T |
|
| Q |
201 |
caataacacttgaatgtgttgtt |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
34239600 |
caataacacttgaatgtgttgtt |
34239578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 87
Target Start/End: Complemental strand, 35094025 - 35093967
Alignment:
| Q |
29 |
aataagacttatatagccgattagaacaactaacttgtgtaactaacttttacatctaa |
87 |
Q |
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| T |
35094025 |
aataagacttatataggcaatgagagcaactaactagtgtaactaacttttacatctaa |
35093967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 86
Target Start/End: Complemental strand, 40620 - 40563
Alignment:
| Q |
29 |
aataagacttatatagccgattagaacaactaacttgtgtaactaacttttacatcta |
86 |
Q |
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|||||| ||||||||| | |||||| |||||||| |||||||| ||||||||||||| |
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| T |
40620 |
aataaggcttatatagtcaattagattaactaactagtgtaacttacttttacatcta |
40563 |
T |
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