View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10671_low_56 (Length: 232)
Name: NF10671_low_56
Description: NF10671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10671_low_56 |
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Alignment Details
Target: chr5 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 16 - 212
Target Start/End: Complemental strand, 39510203 - 39510008
Alignment:
| Q |
16 |
atgaacgtgcaaataacaaatttgaaaggaatactgaatattgtttgagtcnnnnnnnnnnnnnngaatattgaatattgcggacatttttgttctacac |
115 |
Q |
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| T |
39510203 |
atgaacgtgcaaataacaaatttgaaaggaatactgaatattgtttgagtcaaaaagaaaaaaa-gaatattgaatattgcggacatttttgttctacaa |
39510105 |
T |
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| Q |
116 |
ataaggaacatgtctgattctgaaccgttaatattgttcggatttacttccaattagcagcatctgattctcagaaagcttttcaatttcaacgtta |
212 |
Q |
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| T |
39510104 |
ataaggaacatgtctgattctgaaccgttaatattgttcggatttacttccaattagcagcatctgattctcagaaagcttttcaatttcaacgtta |
39510008 |
T |
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