View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10671_low_58 (Length: 231)

Name: NF10671_low_58
Description: NF10671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10671_low_58
NF10671_low_58
[»] chr6 (3 HSPs)
chr6 (26-209)||(24999617-24999800)
chr6 (126-211)||(24997706-24997794)
chr6 (63-104)||(24997820-24997861)
[»] chr4 (4 HSPs)
chr4 (1-85)||(1702426-1702510)
chr4 (1-85)||(9991078-9991162)
chr4 (1-85)||(16613429-16613513)
chr4 (1-87)||(7054283-7054369)
[»] scaffold0442 (1 HSPs)
scaffold0442 (1-87)||(12126-12212)
[»] scaffold0320 (1 HSPs)
scaffold0320 (1-87)||(13767-13853)
[»] chr8 (2 HSPs)
chr8 (1-87)||(9290805-9290891)
chr8 (1-87)||(8212544-8212630)
[»] chr3 (1 HSPs)
chr3 (1-87)||(51424997-51425083)
[»] chr2 (2 HSPs)
chr2 (13-83)||(38981119-38981189)
chr2 (3-72)||(24867176-24867246)


Alignment Details
Target: chr6 (Bit Score: 113; Significance: 2e-57; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 26 - 209
Target Start/End: Original strand, 24999617 - 24999800
Alignment:
Q  26 aaggcactagatagatcaaagtaccaagagaaggtgcaaacaatatggaaataaagccacattgaaaatgcaaatcttcnnnnnnnnnnnnnnnnnnnnn 125  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||                         
T  24999617 aaggcattagatagatcaaagtaccaagagaaggtgcaaacaatatggaaataaagccacattgaaaatgcaaatcatcaaaaaaatagaggaaaaaaaa 24999716  T
Q  126 tgcaaatctttagagctttccctggtatcggaagtattagatacaaaaaggtaactttgaaaatgtttttcattcagatatatc 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24999717 tgcaaatctttagagctttccctggtatcggaagtattagatacaaaaaggtaactttgaaaatgtttttcattcagatatatc 24999800  T

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Target: chr6; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 126 - 211
Target Start/End: Complemental strand, 24997794 - 24997706
Alignment:
Q  126 tgcaaatctttagagctttccctggtatcggaa-gtattagatacaaaaa--ggtaactttgaaaatgtttttcattcagatatatcct 211  Q
    ||||||||||||||| ||||  |||||| |||| ||||||||||||||||  ||||||||||||||||||||||||| |||||||||||    
T  24997794 tgcaaatctttagagttttcaatggtattggaaagtattagatacaaaaaaaggtaactttgaaaatgtttttcatttagatatatcct 24997706  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 104
Target Start/End: Complemental strand, 24997861 - 24997820
Alignment:
Q  63 aaacaatatggaaataaagccacattgaaaatgcaaatcttc 104  Q
    |||||||||||||| |||||||| ||||||||||||||||||    
T  24997861 aaacaatatggaaacaaagccacgttgaaaatgcaaatcttc 24997820  T

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Target: chr4 (Bit Score: 77; Significance: 7e-36; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 1702510 - 1702426
Alignment:
Q  1 agtagtataagcaagcttgaaaaagaaggcactagatagatcaaagtaccaagagaaggtgcaaacaatatggaaataaagccac 85  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  1702510 agtagtataagcaagcttgaaaaagaaggcactagatagatcaaagtaccaagagaaggtgcaaaaaatatggaaacaaagccac 1702426  T

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Target: chr4; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 9991162 - 9991078
Alignment:
Q  1 agtagtataagcaagcttgaaaaagaaggcactagatagatcaaagtaccaagagaaggtgcaaacaatatggaaataaagccac 85  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  9991162 agtagtataagcaagcttgaaaaagaaggcactagatagatcaaagtaccaagagaaggtgcaaaaaatatggaaacaaagccac 9991078  T

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Target: chr4; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 16613513 - 16613429
Alignment:
Q  1 agtagtataagcaagcttgaaaaagaaggcactagatagatcaaagtaccaagagaaggtgcaaacaatatggaaataaagccac 85  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  16613513 agtagtataagcaagcttgaaaaagaaggcactagatagatcaaagtaccaagagaaggtgcaagcaatatggaaacaaagccac 16613429  T

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Target: chr4; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 7054369 - 7054283
Alignment:
Q  1 agtagtataagcaagcttgaaaaagaaggcactagatagatcaaagtaccaagagaaggtgcaaacaatatggaaataaagccacat 87  Q
    |||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||| |||||||||||||| |||| ||||||||||    
T  7054369 agtagtataagcaagcttgaaaaagagggcacaagaaagatcaaagtaccaagagatggtgcaaacaatatagaaacaaagccacat 7054283  T

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Target: scaffold0442 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0442
Description:

Target: scaffold0442; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 12212 - 12126
Alignment:
Q  1 agtagtataagcaagcttgaaaaagaaggcactagatagatcaaagtaccaagagaaggtgcaaacaatatggaaataaagccacat 87  Q
    |||||||||||||||||| ||||||| ||||| ||| ||||||||||||||||||| |||||||||||||| |||| ||||||||||    
T  12212 agtagtataagcaagcttaaaaaagagggcacaagaaagatcaaagtaccaagagatggtgcaaacaatatagaaacaaagccacat 12126  T

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Target: scaffold0320 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0320
Description:

Target: scaffold0320; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 13767 - 13853
Alignment:
Q  1 agtagtataagcaagcttgaaaaagaaggcactagatagatcaaagtaccaagagaaggtgcaaacaatatggaaataaagccacat 87  Q
    |||||||||||||||||||||||||| ||||| ||| |||||||||||||||| || |||||||||||||| |||| ||||||||||    
T  13767 agtagtataagcaagcttgaaaaagagggcacaagaaagatcaaagtaccaagtgatggtgcaaacaatatagaaacaaagccacat 13853  T

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Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 9290805 - 9290891
Alignment:
Q  1 agtagtataagcaagcttgaaaaagaaggcactagatagatcaaagtaccaagagaaggtgcaaacaatatggaaataaagccacat 87  Q
    |||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||| ||||||| |||||| |||| ||||||||||    
T  9290805 agtagtataagcaagcttgaaaaagagggcacgagaaagatcaaagtaccaagagatggtgcaagcaatatagaaacaaagccacat 9290891  T

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Target: chr8; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 8212544 - 8212630
Alignment:
Q  1 agtagtataagcaagcttgaaaaagaaggcactagatagatcaaagtaccaagagaaggtgcaaacaatatggaaataaagccacat 87  Q
    |||||||||||||||||||||||||| ||||| ||| | ||||||||||||||||| |||||||| ||||| |||| ||||||||||    
T  8212544 agtagtataagcaagcttgaaaaagagggcacaagaaatatcaaagtaccaagagatggtgcaaaaaatatagaaacaaagccacat 8212630  T

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Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 51424997 - 51425083
Alignment:
Q  1 agtagtataagcaagcttgaaaaagaaggcactagatagatcaaagtaccaagagaaggtgcaaacaatatggaaataaagccacat 87  Q
    ||||| |||||||||||||||||||| ||||| ||| ||||||||||||||||||| |||||||||||||| |||| ||||||||||    
T  51424997 agtagaataagcaagcttgaaaaagagggcacaagaaagatcaaagtaccaagagatggtgcaaacaatatagaaacaaagccacat 51425083  T

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Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 38981119 - 38981189
Alignment:
Q  13 aagcttgaaaaagaaggcactagatagatcaaagtaccaagagaaggtgcaaacaatatggaaataaagcc 83  Q
    |||||||||||||| ||||| ||| ||||||||||||||||||| |||||||||||||| |||| ||||||    
T  38981119 aagcttgaaaaagagggcacaagaaagatcaaagtaccaagagatggtgcaaacaatatagaaacaaagcc 38981189  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 72
Target Start/End: Complemental strand, 24867246 - 24867176
Alignment:
Q  3 tagtataagcaag-cttgaaaaagaaggcactagatagatcaaagtaccaagagaaggtgcaaacaatatg 72  Q
    ||||||||||||  |||||||||| |||||| | |||| |||||| || || |||||||||||||||||||    
T  24867246 tagtataagcaatacttgaaaaaggaggcaccaaatagttcaaagaacaaaaagaaggtgcaaacaatatg 24867176  T

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