View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10671_low_59 (Length: 230)
Name: NF10671_low_59
Description: NF10671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10671_low_59 |
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Alignment Details
Target: chr5 (Bit Score: 174; Significance: 9e-94; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 33681352 - 33681114
Alignment:
| Q |
1 |
cggagatgtaataaccaatgcaccagaaggtggaactgaaagcaacaacctactcaatttctttgcaaatgaggcagcaaggtaagctgggagaaggggt |
100 |
Q |
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| T |
33681352 |
cggagatgtaataaccaatgcaccagaaggtggaactgagagcaacagcctactcaatttctttgcaaatgaggcagcaaggtaagctgggagaaggggt |
33681253 |
T |
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| Q |
101 |
gactttaagcaaaaatcaagaagctgcaaaaagcaaa-------ttgccagaaaatgaaggacttgcatatgtgaatatttttcgtaac--ttttactct |
191 |
Q |
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| T |
33681252 |
gactttaggcaaaaatcaagaagctgcaaaaagcaaattgcatattgccagaaaatgaaggacttgcatatgtgaatatttttcgtaacttttttactct |
33681153 |
T |
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| Q |
192 |
aatactctgtcatttgaatat-ttttcatc-tcactcga |
228 |
Q |
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| T |
33681152 |
aatactctgtcatttgaatatcttttcatcatcactcga |
33681114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 3 - 228
Target Start/End: Complemental strand, 33666748 - 33666514
Alignment:
| Q |
3 |
gagatgtaataaccaatgcaccagaaggtggaactgaaagcaacaacctactcaatttctttgcaaatgaggcagcaaggtaagctgggagaaggggtga |
102 |
Q |
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| T |
33666748 |
gagatgtaataaccaatgcaccagaaggtggaactgaaagcaacagcctactcaatttctttgcaaatgaggcagccaggtaagctggaagaaggggtga |
33666649 |
T |
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| Q |
103 |
ctttaagcaaaaatcaagaagctgcaaaaagcaaattgc-------cagaaaatgaaggacttgcatatgtgaatatttttcgtaacttttactctaata |
195 |
Q |
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| T |
33666648 |
ctttaggcaagaatcaagaagctgcaaaaagcaaattgcatattgtcagaaaatgaaagacttgcatatgtgaatatttttcgtgacattcactccagta |
33666549 |
T |
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| Q |
196 |
ctctgtcatttgaatat-ttttcatc-tcactcga |
228 |
Q |
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| T |
33666548 |
ctctttcatttgaatatcttttcatcatcactcga |
33666514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 220
Target Start/End: Complemental strand, 33666407 - 33666353
Alignment:
| Q |
167 |
gaatatttttcgtaacttttactctaatactctgtcatttgaatat-ttttcatc |
220 |
Q |
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| T |
33666407 |
gaatatttttcgtaacattcactctagtactctatcatttgaatatcttttcatc |
33666353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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