View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10671_low_6 (Length: 444)
Name: NF10671_low_6
Description: NF10671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10671_low_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 364; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 17 - 430
Target Start/End: Original strand, 3021113 - 3021523
Alignment:
| Q |
17 |
agaagagagcaggtagaagagtgctcaaggagacaagacatccggtgtaccgaggagtacgacgtaggaagaataacaagtgggtttgtgagatgagagt |
116 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3021113 |
agaagagagcaggtagaagagtgttcaaggagacaagacatccggtgtaccgaggagtacgacgtaggaagaataacaagtgggtttgtgagatgagagt |
3021212 |
T |
|
| Q |
117 |
tcccaacaatatcgttaacaaaaataataagtcaaggatttggcttggaacatatccaactcctgaaatggctgcacgtgcacatgacgttgctgcactt |
216 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
3021213 |
tcctaacaatatcgttaacaaaaataataagtcaaggatttggcttggaacatatccaactcctgaaatggctgcacgtgcacatgatgttgctgcactt |
3021312 |
T |
|
| Q |
217 |
gctcttaaggggaaatcagcctgtcttaattttgctgactctgcatggcggttgaggttgccggagtcgaatgatgtgatggagataaggagggcggcga |
316 |
Q |
| |
|
||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
3021313 |
actcttaaaggaaaatcagcttgtcttaattttgctgactctgcatggcggttgaggttgccggagtcgaatgatgcgacggagataaggagggcggcga |
3021412 |
T |
|
| Q |
317 |
tggaggctgctcagttgtttgcggttgaagacaagcagcaatgttgtgttaccgttgaagatggagtgtttatggacatggaagattccaagaatatgct |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3021413 |
tggaggctgctcagttgtttgcggttgaagaca---agcaatgttgtgttaccgttgaagatggagtgtttatggacatggaagattccaagaatatgct |
3021509 |
T |
|
| Q |
417 |
agaagcacaggttc |
430 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
3021510 |
agaagcacaggttc |
3021523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 17 - 430
Target Start/End: Original strand, 3037982 - 3038392
Alignment:
| Q |
17 |
agaagagagcaggtagaagagtgctcaaggagacaagacatccggtgtaccgaggagtacgacgtaggaagaataacaagtgggtttgtgagatgagagt |
116 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3037982 |
agaagagagcaggtagaagagtgttcaaggagacaagacatccggtgtaccgaggagtacgacgtaggaagaataacaagtgggtttgtgagatgagagt |
3038081 |
T |
|
| Q |
117 |
tcccaacaatatcgttaacaaaaataataagtcaaggatttggcttggaacatatccaactcctgaaatggctgcacgtgcacatgacgttgctgcactt |
216 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
3038082 |
tcctaacaatatcgttaacaaaaataataagtcaaggatttggcttggaacatatccaactcctgaaatggctgcacgtgcacatgatgttgctgcactt |
3038181 |
T |
|
| Q |
217 |
gctcttaaggggaaatcagcctgtcttaattttgctgactctgcatggcggttgaggttgccggagtcgaatgatgtgatggagataaggagggcggcga |
316 |
Q |
| |
|
||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
3038182 |
actcttaaaggaaaatcagcttgtcttaattttgctgactctgcatggcggttgaggttgccggagtcgaatgatgcgacggagataaggagggcggcga |
3038281 |
T |
|
| Q |
317 |
tggaggctgctcagttgtttgcggttgaagacaagcagcaatgttgtgttaccgttgaagatggagtgtttatggacatggaagattccaagaatatgct |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3038282 |
tggaggctgctcagttgtttgcggttgaagaca---agcaatgttgtgttaccgttgaagatggagtgtttatggacatggaagattccaagaatatgct |
3038378 |
T |
|
| Q |
417 |
agaagcacaggttc |
430 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
3038379 |
agaagcacaggttc |
3038392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 17 - 327
Target Start/End: Original strand, 3030327 - 3030637
Alignment:
| Q |
17 |
agaagagagcaggtagaagagtgctcaaggagacaagacatccggtgtaccgaggagtacgacgtaggaagaataacaagtgggtttgtgagatgagagt |
116 |
Q |
| |
|
||||||||||||| ||||||||| | ||||||||||||||||| |||||||||||||||||| | ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
3030327 |
agaagagagcagggagaagagtgtttaaggagacaagacatccagtgtaccgaggagtacgaagaaggaacaataacaagtgggtttgtgagatgagagt |
3030426 |
T |
|
| Q |
117 |
tcccaacaatatcgttaacaaaaataataagtcaaggatttggcttggaacatatccaactcctgaaatggctgcacgtgcacatgacgttgctgcactt |
216 |
Q |
| |
|
||| || | || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
3030427 |
tcctaatattaacgttaacaaaaacaataagtcaaggatttggcttggaacatatccaactcctgaaatggctgcacgtgcacatgatgttgctgcactt |
3030526 |
T |
|
| Q |
217 |
gctcttaaggggaaatcagcctgtcttaattttgctgactctgcatggcggttgaggttgccggagtcgaatgatgtgatggagataaggagggcggcga |
316 |
Q |
| |
|
||||||| || |||||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||| | ||||||||||||| || |||| |
|
|
| T |
3030527 |
actcttaaaggaaaatcagcttgtcttaattttgctgactctgcatggcggttgacgttgccggagtcaaatgatgcggtggagataaggagagctgcga |
3030626 |
T |
|
| Q |
317 |
tggaggctgct |
327 |
Q |
| |
|
||||||||||| |
|
|
| T |
3030627 |
tggaggctgct |
3030637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 151 - 269
Target Start/End: Complemental strand, 42553805 - 42553687
Alignment:
| Q |
151 |
aggatttggcttggaacatatccaactcctgaaatggctgcacgtgcacatgacgttgctgcacttgctcttaaggggaaatcagcctgtcttaattttg |
250 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||| ||||||||||| |||||||| ||||| || ||| || |||||||| ||||||||||||| |
|
|
| T |
42553805 |
aggatttggcttggaacatatccaacacctgagatggcagcacgtgcacacgacgttgccgcactggcacttcgcggtaaatcagcttgtcttaattttg |
42553706 |
T |
|
| Q |
251 |
ctgactctgcatggcggtt |
269 |
Q |
| |
|
|||||||||| |||||||| |
|
|
| T |
42553705 |
ctgactctgcgtggcggtt |
42553687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University