View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10671_low_63 (Length: 221)
Name: NF10671_low_63
Description: NF10671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10671_low_63 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 178; Significance: 4e-96; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 18 - 203
Target Start/End: Complemental strand, 5827291 - 5827106
Alignment:
| Q |
18 |
gttgcctcatcaagtaaaagtattctagggtttttcaatatagctcttgcaattgctatacgttgtttttgtccacctgataactgtgtgcctctttcgc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5827291 |
gttgcctcatcaagtaaaagtattctagggtttttcaatatagctcttgcaattgctatacgttgtttttgtccacctgataactgtgtgcctctttcgc |
5827192 |
T |
|
| Q |
118 |
ctaccgatgtattgtaaccacctggaagagagcttataaagttgtgtgcattggctgcgttagctgctgcaattatctcatcctcc |
203 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5827191 |
ctaccgaagtattgtaaccacctggaagagagcttatgaagttgtgtgcattggctgcgttagctgctgcaattatctcatcctcc |
5827106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 21 - 203
Target Start/End: Complemental strand, 5768835 - 5768653
Alignment:
| Q |
21 |
gcctcatcaagtaaaagtattctagggtttttcaatatagctcttgcaattgctatacgttgtttttgtccacctgataactgtgtgcctctttcgccta |
120 |
Q |
| |
|
||||| ||||| ||||||||| | |||||||||| || ||||||||||| || ||||| || || ||||| ||||||| ||||||||||||||| || | |
|
|
| T |
5768835 |
gcctcgtcaagcaaaagtattttggggtttttcagcatggctcttgcaatagcaatacgctgcttctgtcctcctgatagctgtgtgcctctttccccga |
5768736 |
T |
|
| Q |
121 |
ccgatgtattgtaaccacctggaagagagcttataaagttgtgtgcattggctgcgttagctgctgcaattatctcatcctcc |
203 |
Q |
| |
|
| || || | |||||| ||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5768735 |
cagaggtgtcataaccatttggaagagagcttatgaaattgtgtgcattggctgctttagctgctgcaattatctcatcctcc |
5768653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 18 - 116
Target Start/End: Complemental strand, 5794883 - 5794793
Alignment:
| Q |
18 |
gttgcctcatcaagtaaaagtattctagggtttttcaatatagctcttgcaattgctatacgttgtttttgtccacctgataactgtgtgcctctttcg |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
5794883 |
gttgcctcatcaagtaaaagtattctagggtctttcaatatagctcttgca--------acattgtttttgtccacctggtaactgtgtgcctctttcg |
5794793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 202
Target Start/End: Original strand, 5829613 - 5829794
Alignment:
| Q |
21 |
gcctcatcaagtaaaagtattctagggtttttcaatatagctcttgcaattgctatacgttgtttttgtccacctgataactgtgtgcctctttcgccta |
120 |
Q |
| |
|
||||||||||| ||||||||| | |||||||| | || | ||||||||| || || || || || ||||| || || | || ||||||||||| || | |
|
|
| T |
5829613 |
gcctcatcaagcaaaagtattttggggttttttagcatggttcttgcaatagcaatgcgctgcttctgtcctccggacagttgcgtgcctctttctccaa |
5829712 |
T |
|
| Q |
121 |
ccgatgtattgtaaccacctggaagagagcttataaagttgtgtgcattggctgcgttagctgctgcaattatctcatcctc |
202 |
Q |
| |
|
| || || | || ||| |||||||| ||||| ||| |||||||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
5829713 |
cagacgtgtcatatccatctggaagattacttatgaagctgtgtgcatttgctgcgttagctgctgcaatgatctcatcctc |
5829794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 18 - 203
Target Start/End: Original strand, 29327124 - 29327309
Alignment:
| Q |
18 |
gttgcctcatcaagtaaaagtattctagggtttttcaatatagctcttgcaattgctatacgttgtttttgtccacctgataactgtgtgcctctttcgc |
117 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||||| || ||||||||||| || || || || || ||||| || |||| |||||||||||||||| |
|
|
| T |
29327124 |
gttgcctcatcaagcaaaagtattttagggtttttcagcatggctcttgcaatcgcaatgcgctgcttctgtcctccagatagttgtgtgcctctttcgc |
29327223 |
T |
|
| Q |
118 |
ctaccgatgtattgtaaccacctggaagagagcttataaagttgtgtgcattggctgcgttagctgctgcaattatctcatcctcc |
203 |
Q |
| |
|
| || || || | |||||| | |||||||| ||||| ||||||||||||||||||||||| |||||||| || |||||||||||| |
|
|
| T |
29327224 |
caacagaagtgtcataaccatcaggaagagaacttatgaagttgtgtgcattggctgcgttcgctgctgctatgatctcatcctcc |
29327309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 100
Target Start/End: Original strand, 3431216 - 3431268
Alignment:
| Q |
48 |
tttttcaatatagctcttgcaattgctatacgttgtttttgtccacctgataa |
100 |
Q |
| |
|
|||||||| ||||||||||||||||| || | ||| ||||||||||| ||||| |
|
|
| T |
3431216 |
tttttcaacatagctcttgcaattgcaatcctttgcttttgtccaccagataa |
3431268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 122
Target Start/End: Original strand, 17872391 - 17872447
Alignment:
| Q |
66 |
gcaattgctatacgttgtttttgtccacctgataactgtgtgcctctttcgcctacc |
122 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||| || | |||||||| |||||| |
|
|
| T |
17872391 |
gcaattgctattctttgtttttgtccacctgataattgaatccctctttctcctacc |
17872447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University