View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10671_low_64 (Length: 215)
Name: NF10671_low_64
Description: NF10671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10671_low_64 |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 17 - 204
Target Start/End: Original strand, 3284379 - 3284566
Alignment:
| Q |
17 |
acaaacaaaagaacaataattggtaaacagtgttttcagtggaatttataatcccagttaatgcaatgcagttcctcactctggtcaggtggaatataaa |
116 |
Q |
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| T |
3284379 |
acaaacaaaagaacaataattggtaaacagtgttttcagtggaatttataatcccagttaatgcaatgcagttcctcactctggtcaggtggaatataaa |
3284478 |
T |
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| Q |
117 |
ctctgctacaaaacaaaacatgtattcaatttcatgcagagtgaatcagttgcataacgttagttgctcgcatctttcactctttcat |
204 |
Q |
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| T |
3284479 |
ctctgctacaaaacaaaacatgtattcaatttcatgcagagtgaatcagttgcataacgttagttgctcgcatctttcactctttcat |
3284566 |
T |
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Target: chr2 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 56 - 201
Target Start/End: Complemental strand, 32752981 - 32752833
Alignment:
| Q |
56 |
tggaatttataatcccagttaatgcaatgcagttcctcactct--------ggtcaggtggaatataaactctgctacaaaacaaaacatgtattcaatt |
147 |
Q |
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| T |
32752981 |
tggaatctataatcccagttaatgcaccgtagttcctcactctatctagctggtcaagttgaatataaactctgcttcaaaaca-----tgcattcaatt |
32752887 |
T |
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| Q |
148 |
tcatgcagagtgaatcagttgcataacgttagttgctcgcatctttcactcttt |
201 |
Q |
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| T |
32752886 |
tgaggcagagtgaatcagatgcataatgttagttgctcacgtctttcactcttt |
32752833 |
T |
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