View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10671_low_65 (Length: 215)

Name: NF10671_low_65
Description: NF10671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10671_low_65
NF10671_low_65
[»] chr5 (15 HSPs)
chr5 (3-215)||(20772870-20773081)
chr5 (3-215)||(20781645-20781856)
chr5 (3-210)||(19236805-19237014)
chr5 (3-215)||(24929871-24930083)
chr5 (3-213)||(28909231-28909442)
chr5 (3-213)||(28945626-28945837)
chr5 (3-213)||(28895983-28896194)
chr5 (3-213)||(28924809-28925020)
chr5 (3-202)||(22461069-22461270)
chr5 (3-202)||(22467693-22467894)
chr5 (3-213)||(28889279-28889490)
chr5 (53-215)||(20820118-20820279)
chr5 (53-215)||(20827218-20827379)
chr5 (54-90)||(34830110-34830146)
chr5 (62-114)||(18407944-18407996)
[»] chr6 (13 HSPs)
chr6 (3-215)||(9099014-9099226)
chr6 (3-210)||(20007888-20008097)
chr6 (3-215)||(21364424-21364634)
chr6 (3-215)||(23968406-23968616)
chr6 (3-120)||(31252419-31252538)
chr6 (3-114)||(11288611-11288721)
chr6 (3-114)||(15458492-15458605)
chr6 (3-114)||(15465087-15465200)
chr6 (3-89)||(28288452-28288537)
chr6 (54-107)||(10986173-10986226)
chr6 (46-79)||(24563475-24563508)
chr6 (46-90)||(34639971-34640015)
chr6 (46-90)||(34646645-34646689)
[»] chr3 (14 HSPs)
chr3 (3-215)||(19235011-19235223)
chr3 (3-210)||(12033386-12033594)
chr3 (3-210)||(17131637-17131846)
chr3 (3-210)||(14865751-14865960)
chr3 (5-122)||(13312841-13312957)
chr3 (46-120)||(10389428-10389502)
chr3 (46-120)||(10414517-10414591)
chr3 (46-120)||(10421187-10421261)
chr3 (5-122)||(13302185-13302301)
chr3 (3-114)||(23370446-23370558)
chr3 (3-77)||(10555350-10555424)
chr3 (5-169)||(13323732-13323896)
chr3 (46-124)||(51301581-51301659)
chr3 (56-113)||(24933823-24933880)
[»] scaffold0131 (1 HSPs)
scaffold0131 (3-215)||(898-1110)
[»] scaffold0053 (1 HSPs)
scaffold0053 (3-215)||(79430-79645)
[»] chr1 (4 HSPs)
chr1 (3-210)||(20851073-20851282)
chr1 (3-210)||(20857700-20857909)
chr1 (3-210)||(21706181-21706390)
chr1 (3-207)||(21710726-21710932)
[»] chr8 (4 HSPs)
chr8 (3-210)||(24320611-24320820)
chr8 (62-122)||(29643386-29643446)
chr8 (46-114)||(44477625-44477693)
chr8 (46-114)||(44492783-44492851)
[»] chr7 (14 HSPs)
chr7 (3-215)||(16090975-16091190)
chr7 (3-215)||(29181049-29181264)
chr7 (3-210)||(20906402-20906610)
chr7 (3-148)||(2971222-2971368)
chr7 (3-215)||(2465262-2465473)
chr7 (3-215)||(3857309-3857520)
chr7 (3-120)||(14319570-14319688)
chr7 (3-89)||(14230808-14230895)
chr7 (3-114)||(31155396-31155509)
chr7 (5-114)||(14567206-14567316)
chr7 (62-114)||(11382871-11382923)
chr7 (62-114)||(11389348-11389400)
chr7 (62-114)||(13679496-13679548)
chr7 (54-114)||(21230952-21231012)
[»] scaffold0072 (1 HSPs)
scaffold0072 (3-215)||(49910-50126)
[»] scaffold0023 (1 HSPs)
scaffold0023 (3-210)||(135343-135552)
[»] chr4 (3 HSPs)
chr4 (46-215)||(16146815-16146985)
chr4 (46-90)||(53483731-53483775)
chr4 (54-119)||(27906263-27906328)
[»] chr2 (8 HSPs)
chr2 (13-176)||(25180880-25181044)
chr2 (15-210)||(10482-10679)
chr2 (3-120)||(27207660-27207778)
chr2 (3-90)||(26885208-26885296)
chr2 (3-87)||(23168240-23168324)
chr2 (3-87)||(23579497-23579581)
chr2 (46-79)||(27366533-27366566)
chr2 (46-83)||(5706008-5706045)
[»] scaffold0384 (1 HSPs)
scaffold0384 (56-215)||(16059-16218)
[»] scaffold1318 (1 HSPs)
scaffold1318 (3-210)||(1853-2062)
[»] scaffold0029 (2 HSPs)
scaffold0029 (3-215)||(91145-91358)
scaffold0029 (3-215)||(96871-97084)
[»] scaffold1469 (1 HSPs)
scaffold1469 (46-207)||(1264-1425)
[»] scaffold0348 (1 HSPs)
scaffold0348 (56-210)||(9241-9396)
[»] scaffold0183 (1 HSPs)
scaffold0183 (3-114)||(6-116)
[»] scaffold0127 (1 HSPs)
scaffold0127 (3-124)||(10231-10353)
[»] scaffold0001 (1 HSPs)
scaffold0001 (3-90)||(492969-493057)
[»] scaffold0720 (1 HSPs)
scaffold0720 (3-120)||(3343-3461)
[»] scaffold0609 (1 HSPs)
scaffold0609 (46-120)||(5842-5916)
[»] scaffold0553 (1 HSPs)
scaffold0553 (3-114)||(10136-10248)
[»] scaffold0544 (1 HSPs)
scaffold0544 (3-114)||(1466-1578)
[»] scaffold0249 (1 HSPs)
scaffold0249 (46-114)||(13879-13947)
[»] scaffold0099 (1 HSPs)
scaffold0099 (63-214)||(12857-13019)
[»] scaffold0026 (1 HSPs)
scaffold0026 (46-114)||(111688-111756)
[»] scaffold0261 (1 HSPs)
scaffold0261 (54-120)||(23562-23628)
[»] scaffold0090 (1 HSPs)
scaffold0090 (61-114)||(18172-18225)
[»] scaffold0317 (1 HSPs)
scaffold0317 (62-114)||(1389-1441)
[»] scaffold0129 (1 HSPs)
scaffold0129 (46-90)||(45259-45303)
[»] scaffold0107 (1 HSPs)
scaffold0107 (54-114)||(40524-40584)


Alignment Details
Target: chr5 (Bit Score: 161; Significance: 5e-86; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 3 - 215
Target Start/End: Complemental strand, 20773081 - 20772870
Alignment:
Q  3 agaagaccaagagagaagaacctaggaattgatttgttgtgcttttgtctttgcaattctaaggtaagggtgagattatctttcaatagttataatatat 102  Q
    ||||||||||||||||||| | |||||||||||||| ||| ||||  ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  20773081 agaagaccaagagagaagagcttaggaattgatttgctgtacttta-tctttgcaattctaaggtaagggtgggattatctttcaatagttataatatat 20772983  T
Q  103 gatttttgaaaagtaatcaatttaactgtttttaaggtaaaattggaaaatttagggttaatgatgaatttgaagaaaatgtgtaagaatcaggtttata 202  Q
    ||||| |||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  20772982 gatttctgaaaattaatcaatttaactgttcttaaggtaaaattgggaaatttagggttaatgatgattttgaagaaaatgtgtaagaatcaggtttata 20772883  T
Q  203 atgttgtatttga 215  Q
    |||||||||||||    
T  20772882 atgttgtatttga 20772870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 3 - 215
Target Start/End: Complemental strand, 20781856 - 20781645
Alignment:
Q  3 agaagaccaagagagaagaacctaggaattgatttgttgtgcttttgtctttgcaattctaaggtaagggtgagattatctttcaatagttataatatat 102  Q
    ||||||||||||||||||| | |||||||||||||| ||| ||||  ||||||||||||||||||||||||| ||||||||||||||| |||||||||||    
T  20781856 agaagaccaagagagaagagcttaggaattgatttgctgtacttta-tctttgcaattctaaggtaagggtgggattatctttcaataattataatatat 20781758  T
Q  103 gatttttgaaaagtaatcaatttaactgtttttaaggtaaaattggaaaatttagggttaatgatgaatttgaagaaaatgtgtaagaatcaggtttata 202  Q
    ||||| |||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  20781757 gatttctgaaaattaatcaatttaactgttcttaaggtaaaattgggaaatttagggttaatgatgattttgaagaaaatgtgtaagaatcaggtttata 20781658  T
Q  203 atgttgtatttga 215  Q
    |||||||||||||    
T  20781657 atgttgtatttga 20781645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 3 - 210
Target Start/End: Complemental strand, 19237014 - 19236805
Alignment:
Q  3 agaagaccaagagagaagaacctaggaattgatttgttgtgctttt-gtctttgcaattctaaggtaagggtgagattatctttcaatagttataatata 101  Q
    ||||||||||||||||||||| |||||| ||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  19237014 agaagaccaagagagaagaacttaggaactgatttgctgtgctttttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatata 19236915  T
Q  102 tgatttttgaaaagtaatcaatttaactgtttttaaggtaaaattggaaaatttagggttaatgatgaatttg-aagaaaatgtgtaagaatcaggttta 200  Q
    | |||| |||||| ||||||||| ||||||| ||||||||||||||| |||||||||||||| ||||| |||| ||||||| || |||| ||||||||||    
T  19236914 taatttctgaaaattaatcaattgaactgttcttaaggtaaaattgggaaatttagggttaaggatgattttgaaagaaaaggtataaggatcaggttta 19236815  T
Q  201 taatgttgta 210  Q
    || |||||||    
T  19236814 tattgttgta 19236805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 3 - 215
Target Start/End: Original strand, 24929871 - 24930083
Alignment:
Q  3 agaagaccaagagagaagaacctaggaattgatttgttgtgcttttgtctttgcaattctaaggtaagggtgagattatctttcaatagttataatatat 102  Q
    ||||||||||||||||||| | |||||||||| ||| ||  ||||  ||||| ||||||||||||||||||| |||||||||||||||||| ||||||||    
T  24929871 agaagaccaagagagaagagcttaggaattgacttgctgcacttta-tctttacaattctaaggtaagggtgggattatctttcaatagttctaatatat 24929969  T
Q  103 gatttttgaaaagt-aatcaatttaactgtttttaaggtaaaattggaaaatttagggttaatgatgaatttgaagaaaatgtgtaagaatcaggtttat 201  Q
    ||||| | |||| | |||||||||||||||| ||||||||||||||| |||||||||||||||||||| | ||||| |||||||||||||||||||||||    
T  24929970 gatttctaaaaaattaatcaatttaactgttcttaaggtaaaattgggaaatttagggttaatgatgattctgaaggaaatgtgtaagaatcaggtttat 24930069  T
Q  202 aatgttgtatttga 215  Q
    ||||||||||||||    
T  24930070 aatgttgtatttga 24930083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 3 - 213
Target Start/End: Original strand, 28909231 - 28909442
Alignment:
Q  3 agaagaccaagagagaagaacctaggaattgatttgttgtgcttttgtctttgcaattctaaggtaagggtgagattatctttcaatagttataatatat 102  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| ||| ||||||||||||| ||| |||||    
T  28909231 agaagaccaagagagaagaacctaggaattgatttgctgtgcttttgtcgttgcaattctaaggtaagggtgggatcatctttcaatagtgatattatat 28909330  T
Q  103 gatttttgaaaagtaatcaatttaactgtttttaaggt-aaaattggaaaatttagggttaatgatgaatttgaagaaaatgtgtaagaatcaggtttat 201  Q
    ||||| |||||| ||| | |||||| |||| ||||||| |||||||| ||| ||||| || ||||||| ||||||||||||| |||| | ||||||||||    
T  28909331 gatttctgaaaattaaactatttaattgttcttaaggtaaaaattgggaaaattaggtttgatgatgattttgaagaaaatgcgtaaaattcaggtttat 28909430  T
Q  202 aatgttgtattt 213  Q
     | |||||||||    
T  28909431 gacgttgtattt 28909442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 3 - 213
Target Start/End: Original strand, 28945626 - 28945837
Alignment:
Q  3 agaagaccaagagagaagaacctaggaattgatttgttgtgcttttgtctttgcaattctaaggtaagggtgagattatctttcaatagttataatatat 102  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| ||| ||||||||||||| ||| |||||    
T  28945626 agaagaccaagagagaagaacctaggaattgatttgctgtgcttttgtcgttgcaattctaaggtaagggtgggatcatctttcaatagtgatattatat 28945725  T
Q  103 gatttttgaaaagtaatcaatttaactgtttttaaggt-aaaattggaaaatttagggttaatgatgaatttgaagaaaatgtgtaagaatcaggtttat 201  Q
    ||||| |||||| ||| | |||||| |||| ||||||| |||||||| ||| ||||| || ||||||| ||||||||||||| |||| | ||||||||||    
T  28945726 gatttctgaaaattaaactatttaattgttcttaaggtaaaaattgggaaaattaggtttgatgatgattttgaagaaaatgcgtaaaattcaggtttat 28945825  T
Q  202 aatgttgtattt 213  Q
     | |||||||||    
T  28945826 gacgttgtattt 28945837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 3 - 213
Target Start/End: Original strand, 28895983 - 28896194
Alignment:
Q  3 agaagaccaagagagaagaacctaggaattgatttgttgtgcttttgtctttgcaattctaaggtaagggtgagattatctttcaatagttataatatat 102  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||| ||| ||||||||||||| ||| |||||    
T  28895983 agaagaccaagagagaagaacctaggaattgatttgctgtgcttttgccgttgcaattctaaggtaagggtgggatcatctttcaatagtgatattatat 28896082  T
Q  103 gatttttgaaaagtaatcaatttaactgtttttaaggt-aaaattggaaaatttagggttaatgatgaatttgaagaaaatgtgtaagaatcaggtttat 201  Q
    ||||| |||||| ||| | |||||| |||| ||||||| |||||||| ||| ||||| || ||||||| ||||||||||||| |||| | ||||||||||    
T  28896083 gatttctgaaaattaaactatttaattgttcttaaggtaaaaattgggaaaattaggtttgatgatgattttgaagaaaatgcgtaaaattcaggtttat 28896182  T
Q  202 aatgttgtattt 213  Q
     | |||||||||    
T  28896183 gacgttgtattt 28896194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 3 - 213
Target Start/End: Original strand, 28924809 - 28925020
Alignment:
Q  3 agaagaccaagagagaagaacctaggaattgatttgttgtgcttttgtctttgcaattctaaggtaagggtgagattatctttcaatagttataatatat 102  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||| ||| ||||||||||||| ||| |||||    
T  28924809 agaagaccaagagagaagaacctaggaattgatttgctgtgcttttgccgttgcaattctaaggtaagggtgggatcatctttcaatagtgatattatat 28924908  T
Q  103 gatttttgaaaagtaatcaatttaactgtttttaaggt-aaaattggaaaatttagggttaatgatgaatttgaagaaaatgtgtaagaatcaggtttat 201  Q
    ||||| |||||| ||| | |||||| |||| ||||||| |||||||| ||| ||||| || ||||||| ||||||||||||| |||| | ||||||||||    
T  28924909 gatttctgaaaattaaactatttaattgttcttaaggtaaaaattgggaaaattaggtttgatgatgattttgaagaaaatgcgtaaaattcaggtttat 28925008  T
Q  202 aatgttgtattt 213  Q
     | |||||||||    
T  28925009 gacgttgtattt 28925020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 3 - 202
Target Start/End: Complemental strand, 22461270 - 22461069
Alignment:
Q  3 agaagaccaagagagaagaacctaggaattgatttgttgtgc-ttttgtctttgcaattctaaggtaagggtgagattatctttcaatagttataatata 101  Q
    ||||||||||||||||||||| || ||| ||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  22461270 agaagaccaagagagaagaacttaagaactgatttgctgtgccttttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatata 22461171  T
Q  102 tgatttttg-aaaagtaatcaatttaactgtttttaaggtaaaattggaaaatttagggttaatgatgaatttgaagaaaatgtgtaagaatcaggttta 200  Q
    | |||| || |||| ||||||||| ||||||| ||||||||||||||| |||||||||||||| ||||| ||  ||||||| || |||| ||||||||||    
T  22461170 taatttctgaaaaattaatcaattgaactgttcttaaggtaaaattgggaaatttagggttaaggatgatttgaaagaaaaggtataaggatcaggttta 22461071  T
Q  201 ta 202  Q
    ||    
T  22461070 ta 22461069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 3 - 202
Target Start/End: Complemental strand, 22467894 - 22467693
Alignment:
Q  3 agaagaccaagagagaagaacctaggaattgatttgttgtgc-ttttgtctttgcaattctaaggtaagggtgagattatctttcaatagttataatata 101  Q
    ||||||||||||||||||||| || ||| ||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  22467894 agaagaccaagagagaagaacttaagaactgatttgctgtgccttttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatata 22467795  T
Q  102 tgatttttg-aaaagtaatcaatttaactgtttttaaggtaaaattggaaaatttagggttaatgatgaatttgaagaaaatgtgtaagaatcaggttta 200  Q
    | |||| || |||| ||||||||| ||||||| ||||||||||||||| |||||||||||||| ||||| ||  ||||||| || |||| ||||||||||    
T  22467794 taatttctgaaaaattaatcaattgaactgttcttaaggtaaaattgggaaatttagggttaaggatgatttgaaagaaaaggtataaggatcaggttta 22467695  T
Q  201 ta 202  Q
    ||    
T  22467694 ta 22467693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 3 - 213
Target Start/End: Original strand, 28889279 - 28889490
Alignment:
Q  3 agaagaccaagagagaagaacctaggaattgatttgttgtgcttttgtctttgcaattctaaggtaagggtgagattatctttcaatagttataatatat 102  Q
    ||||||||||||||||||||||||||||||||||||   |||||||| | |||||||||||||||||||||| ||| ||||||||||||| ||| |||||    
T  28889279 agaagaccaagagagaagaacctaggaattgatttgcattgcttttgccgttgcaattctaaggtaagggtgggatcatctttcaatagtgatattatat 28889378  T
Q  103 gatttttgaaaagtaatcaatttaactgtttttaaggt-aaaattggaaaatttagggttaatgatgaatttgaagaaaatgtgtaagaatcaggtttat 201  Q
    ||||| |||||| ||| | |||||| |||| ||||||| |||||||| ||| ||||| || ||||||| ||||||||||||| |||| | ||||||||||    
T  28889379 gatttctgaaaattaaactatttaattgttcttaaggtaaaaattgggaaaattaggtttgatgatgattttgaagaaaatgcgtaaaattcaggtttat 28889478  T
Q  202 aatgttgtattt 213  Q
     | |||||||||    
T  28889479 gacgttgtattt 28889490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 53 - 215
Target Start/End: Complemental strand, 20820279 - 20820118
Alignment:
Q  53 ttgcaattctaaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaagtaatcaatttaactgtttttaaggtaaaattggaaaa 152  Q
    |||||||||||||||||||||| ||| |||||||||||||  |||||||| |||| |||  | |||  |||| ||| ||| |||||||||||||||||||    
T  20820279 ttgcaattctaaggtaagggtgggatcatctttcaatagtgttaatatataatttctgatgattaagtaattcaaccgttcttaaggtaaaattggaaaa 20820180  T
Q  153 tttagggttaatgatgaatttgaagaaaatgtgtaagaatcaggtttataatgttgtatttga 215  Q
     |||||||||||||||| |||||||| ||||  ||||| ||||||||||||||||||||||||    
T  20820179 -ttagggttaatgatgattttgaagagaatgcataagattcaggtttataatgttgtatttga 20820118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 53 - 215
Target Start/End: Complemental strand, 20827379 - 20827218
Alignment:
Q  53 ttgcaattctaaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaagtaatcaatttaactgtttttaaggtaaaattggaaaa 152  Q
    |||||||||||||||||||||| ||| |||||||||||||  |||||||| |||| |||  | |||  |||| ||| ||| |||||||||||||||||||    
T  20827379 ttgcaattctaaggtaagggtgggatcatctttcaatagtgttaatatataatttctgatgattaagtaattcaaccgttcttaaggtaaaattggaaaa 20827280  T
Q  153 tttagggttaatgatgaatttgaagaaaatgtgtaagaatcaggtttataatgttgtatttga 215  Q
     |||||||||||||||| |||||||| ||||  ||||| ||||||||||||||||||||||||    
T  20827279 -ttagggttaatgatgattttgaagagaatgcataagattcaggtttataatgttgtatttga 20827218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 90
Target Start/End: Complemental strand, 34830146 - 34830110
Alignment:
Q  54 tgcaattctaaggtaagggtgagattatctttcaata 90  Q
    ||||||||||||||||||||| |||||||||||||||    
T  34830146 tgcaattctaaggtaagggtgggattatctttcaata 34830110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 114
Target Start/End: Original strand, 18407944 - 18407996
Alignment:
Q  62 taaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaa 114  Q
    |||||||||||||||| ||||| |||||| | ||||||||| |||| ||||||    
T  18407944 taaggtaagggtgagactatctctcaataatcataatatataatttctgaaaa 18407996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 146; Significance: 4e-77; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 3 - 215
Target Start/End: Original strand, 9099014 - 9099226
Alignment:
Q  3 agaagaccaagagagaagaacctaggaattgatttgttgtgcttttgtctttgcaattctaaggtaagggtgagattatctttcaatagttataatatat 102  Q
    ||||||||||||||||||| | |||||||||||||| ||  ||||  ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  9099014 agaagaccaagagagaagagcttaggaattgatttgctgcacttta-tctttgcaattctaaggtaagggtgggattatctttcaatagttataatatat 9099112  T
Q  103 gatttttgaaaagt-aatcaatttaactgtttttaaggtaaaattggaaaatttagggttaatgatgaatttgaagaaaatgtgtaagaatcaggtttat 201  Q
    ||||| |||||| | |||||||||||||||| ||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  9099113 gatttctgaaaaattaatcaatttaactgttcttaaggtaaaattgggaaatttagggttaatgatgattctgaagaaaatgtgtaagaatcaggtttat 9099212  T
Q  202 aatgttgtatttga 215  Q
    ||||||||||||||    
T  9099213 aatgttgtatttga 9099226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 3 - 210
Target Start/End: Original strand, 20007888 - 20008097
Alignment:
Q  3 agaagaccaagagagaagaacctaggaattgatttgttgtgcttttgtctttgcaattctaaggtaagggtgagattatctttcaatagttataatatat 102  Q
    ||||||||||||||||||||| |||||| | ||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||    
T  20007888 agaagaccaagagagaagaacttaggaactcatttgctgtgcttttgtctttgcaattctaaggtaagggtgggatcatctttcaatagtcataatatat 20007987  T
Q  103 gatttttg-aaaagtaatcaatttaactgtttttaaggtaaaattggaaaatttagggttaatgatgaatttg-aagaaaatgtgtaagaatcaggttta 200  Q
     |||| || |||| ||||||||| ||||||| ||||||||||||||| |||||||||||||| ||||| |||| ||||||| || |||| ||||||||||    
T  20007988 aatttatgaaaaattaatcaattgaactgttcttaaggtaaaattgggaaatttagggttaaggatgattttgaaagaaaaggtataaggatcaggttta 20008087  T
Q  201 taatgttgta 210  Q
    || |||||||    
T  20008088 tattgttgta 20008097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 3 - 215
Target Start/End: Original strand, 21364424 - 21364634
Alignment:
Q  3 agaagaccaagagagaagaacctaggaattgatttgttgtgcttttgtctttgcaattctaaggtaagggtgagattatctttcaatagttataatatat 102  Q
    ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |||||||||||| ||||||| |||| || | |||||||||    
T  21364424 agaagaccaagagagaagaacctaggaattgttttgctgtgcttttgtctttgcaattcaaaggtaagggtgggattatccttcagtaatgataatatat 21364523  T
Q  103 gatttttgaaaagtaatcaatttaactgtttttaaggtaaaattggaaaatttagggttaatgatgaatttgaagaaaatgtgtaagaatcaggtttata 202  Q
    ||||| |||||| ||| ||||||||||| ||||| ||||||||||| ||| ||||||||||||     |||||||||||| ||||||| | |||||||||    
T  21364524 gatttctgaaaattaagcaatttaactg-ttttatggtaaaattgggaaa-ttagggttaatggcatttttgaagaaaatatgtaagacttaggtttata 21364621  T
Q  203 atgttgtatttga 215  Q
    |||||||||||||    
T  21364622 atgttgtatttga 21364634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 3 - 215
Target Start/End: Original strand, 23968406 - 23968616
Alignment:
Q  3 agaagaccaagagagaagaacctaggaattgatttgttgtgcttttgtctttgcaattctaaggtaagggtgagattatctttcaatagttataatatat 102  Q
    ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |||||||||||| ||||||| |||| || | |||||||||    
T  23968406 agaagaccaagagagaagaacctaggaattgttttgctgtgcttttgtctttgcaattcaaaggtaagggtgggattatccttcagtaatgataatatat 23968505  T
Q  103 gatttttgaaaagtaatcaatttaactgtttttaaggtaaaattggaaaatttagggttaatgatgaatttgaagaaaatgtgtaagaatcaggtttata 202  Q
    ||||| |||||| ||| ||||||||||| ||||| ||||||||||| ||| ||||||||||||     |||||||||||| ||||||| | |||||||||    
T  23968506 gatttctgaaaattaagcaatttaactg-ttttatggtaaaattgggaaa-ttagggttaatggcatttttgaagaaaatatgtaagacttaggtttata 23968603  T
Q  203 atgttgtatttga 215  Q
    |||||||||||||    
T  23968604 atgttgtatttga 23968616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 3 - 120
Target Start/End: Complemental strand, 31252538 - 31252419
Alignment:
Q  3 agaagaccaagagagaagaacctaggaattgatttgttgtgcttt---tgtctttgcaattctaaggtaagggtgagattatctttcaatagttataata 99  Q
    ||||||||||||||||||||| ||||||  |||| | |||| |||   |||||||||||||||||||||||||||||||||||||| |||  ||||||||    
T  31252538 agaagaccaagagagaagaacttaggaaccgatt-gctgtgttttctttgtctttgcaattctaaggtaagggtgagattatcttttaatgattataata 31252440  T
Q  100 tatgatttttgaaaagtaatc 120  Q
    ||| |||| |||||| |||||    
T  31252439 tataatttctgaaaattaatc 31252419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 3 - 114
Target Start/End: Original strand, 11288611 - 11288721
Alignment:
Q  3 agaagaccaagagagaagaacctaggaattgatttgttgtgcttttgtctttgcaattctaaggtaagggtgagattatctttcaatagttataatatat 102  Q
    ||||||||||||||||||| | |||||| ||||| | |||| ||||||||| |||||||||||||||||||| ||||||||||||||  |  ||||||||    
T  11288611 agaagaccaagagagaagagcttaggaactgatt-gctgtgtttttgtcttggcaattctaaggtaagggtgggattatctttcaatgatcttaatatat 11288709  T
Q  103 gatttttgaaaa 114  Q
     |||| ||||||    
T  11288710 aatttctgaaaa 11288721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 3 - 114
Target Start/End: Complemental strand, 15458605 - 15458492
Alignment:
Q  3 agaagaccaagagagaagaacctag-gaattgatttgttgtgcttt---tgtctttgcaattctaaggtaagggtgagattatctttcaatagttataat 98  Q
    ||||||||||||||||||||| ||| |||| |||| |||| |||||   ||||||||||||||||||||||||||| ||||||||||||||  |||||||    
T  15458605 agaagaccaagagagaagaac-tagagaatcgatt-gttgagctttctttgtctttgcaattctaaggtaagggtgggattatctttcaatgattataat 15458508  T
Q  99 atatgatttttgaaaa 114  Q
    |||| |||| ||||||    
T  15458507 atataatttctgaaaa 15458492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 3 - 114
Target Start/End: Complemental strand, 15465200 - 15465087
Alignment:
Q  3 agaagaccaagagagaagaacctag-gaattgatttgttgtgcttt---tgtctttgcaattctaaggtaagggtgagattatctttcaatagttataat 98  Q
    ||||||||||||||||||||| ||| |||| |||| |||| |||||   ||||||||||||||||||||||||||| ||||||||||||||  |||||||    
T  15465200 agaagaccaagagagaagaac-tagagaatcgatt-gttgagctttctttgtctttgcaattctaaggtaagggtgggattatctttcaatgattataat 15465103  T
Q  99 atatgatttttgaaaa 114  Q
    |||| |||| ||||||    
T  15465102 atataatttctgaaaa 15465087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 3 - 89
Target Start/End: Original strand, 28288452 - 28288537
Alignment:
Q  3 agaagaccaagagagaagaacctaggaattgatttgttgtgcttttgtctttgcaattctaaggtaagggtgagattatctttcaat 89  Q
    ||||||||||||||||| | | |||||| ||||| | |||| ||||||||||||||||||||||||||||||||| ||||| |||||    
T  28288452 agaagaccaagagagaaaagcttaggaactgatt-gctgtgtttttgtctttgcaattctaaggtaagggtgagactatctctcaat 28288537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 10986173 - 10986226
Alignment:
Q  54 tgcaattctaaggtaagggtgagattatctttcaatagttataatatatgattt 107  Q
    |||||||||||||||||||||||| |||||||||||| | ||||| ||| ||||    
T  10986173 tgcaattctaaggtaagggtgagactatctttcaataatcataatctataattt 10986226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 79
Target Start/End: Complemental strand, 24563508 - 24563475
Alignment:
Q  46 tttgtctttgcaattctaaggtaagggtgagatt 79  Q
    ||||||||||||||||||||||||||||||||||    
T  24563508 tttgtctttgcaattctaaggtaagggtgagatt 24563475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 90
Target Start/End: Original strand, 34639971 - 34640015
Alignment:
Q  46 tttgtctttgcaattctaaggtaagggtgagattatctttcaata 90  Q
    |||||||| ||||||||||||||||||||||| ||||| ||||||    
T  34639971 tttgtcttcgcaattctaaggtaagggtgagactatctctcaata 34640015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 90
Target Start/End: Original strand, 34646645 - 34646689
Alignment:
Q  46 tttgtctttgcaattctaaggtaagggtgagattatctttcaata 90  Q
    |||||||| ||||||||||||||||||||||| ||||| ||||||    
T  34646645 tttgtcttcgcaattctaaggtaagggtgagactatctctcaata 34646689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 146; Significance: 4e-77; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 3 - 215
Target Start/End: Original strand, 19235011 - 19235223
Alignment:
Q  3 agaagaccaagagagaagaacctaggaattgatttgttgtgcttttgtctttgcaattctaaggtaagggtgagattatctttcaatagttataatatat 102  Q
    ||||||||||||||||||| | |||||||||||||| ||  ||||  ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  19235011 agaagaccaagagagaagagcttaggaattgatttgctgcacttta-tctttgcaattctaaggtaagggtgggattatctttcaatagttataatatat 19235109  T
Q  103 gatttttgaaaagt-aatcaatttaactgtttttaaggtaaaattggaaaatttagggttaatgatgaatttgaagaaaatgtgtaagaatcaggtttat 201  Q
    ||||| |||||| | |||||||||||||||| ||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  19235110 gatttctgaaaaattaatcaatttaactgttcttaaggtaaaattgggaaatttagggttaatgatgattctgaagaaaatgtgtaagaatcaggtttat 19235209  T
Q  202 aatgttgtatttga 215  Q
    ||||||||||||||    
T  19235210 aatgttgtatttga 19235223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 3 - 210
Target Start/End: Original strand, 12033386 - 12033594
Alignment:
Q  3 agaagaccaagagagaagaacctaggaattgatttgttgtgcttttgtctttgcaattctaaggtaagggtgagattatctttcaatagttataatatat 102  Q
    ||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  12033386 agaagaccaagagagaagaacttaggaactgatttgatgtgcttttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatat 12033485  T
Q  103 gatttttgaaaagtaatcaatttaactgtttttaaggtaaaattggaaaatttagggttaatgatgaatttg-aagaaaatgtgtaagaatcaggtttat 201  Q
     |||| |||||| ||||||||| ||||||| ||||||||||||||| ||||| |||||||||||||| |||| ||||||| || ||||||||||||||||    
T  12033486 aatttctgaaaattaatcaattgaactgttcttaaggtaaaattgggaaattaagggttaatgatgattttgaaagaaaaggtataagaatcaggtttat 12033585  T
Q  202 aatgttgta 210  Q
    |||||||||    
T  12033586 aatgttgta 12033594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 3 - 210
Target Start/End: Complemental strand, 17131846 - 17131637
Alignment:
Q  3 agaagaccaagagagaagaacctaggaattgatttgttgtgctttt-gtctttgcaattctaaggtaagggtgagattatctttcaatagttataatata 101  Q
    ||||||||||||||||||||| |||||| ||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  17131846 agaagaccaagagagaagaacttaggaactgatttgctgtgctttttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatata 17131747  T
Q  102 tgatttttgaaaagtaatcaatttaactgtttttaaggtaaaattggaaaatttagggttaatgatgaatttg-aagaaaatgtgtaagaatcaggttta 200  Q
    | |||| |||||| ||||||||| ||||||| ||||||||||||||| |||||||||||||| ||||| |||| ||||||| || |||| ||||||||||    
T  17131746 taatttctgaaaattaatcaattgaactgttcttaaggtaaaattgggaaatttagggttaaggatgattttgaaagaaaaggtataaggatcaggttta 17131647  T
Q  201 taatgttgta 210  Q
    ||||||||||    
T  17131646 taatgttgta 17131637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 3 - 210
Target Start/End: Complemental strand, 14865960 - 14865751
Alignment:
Q  3 agaagaccaagagagaagaacctaggaattgatttgttgtgct-tttgtctttgcaattctaaggtaagggtgagattatctttcaatagttataatata 101  Q
    ||||||||||||||||||||| |||||| ||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||     
T  14865960 agaagaccaagagagaagaacttaggaactgatttgctgtgctatttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatg 14865861  T
Q  102 tgatttttgaaaagtaatcaatttaactgtttttaaggtaaaattggaaaatttagggttaatgatgaatttg-aagaaaatgtgtaagaatcaggttta 200  Q
    | |||| |||||| ||||||||| ||||||| ||||||||||||||| ||| | | |||||||||||| |||| ||||||| ||||||||| ||||||||    
T  14865860 taatttctgaaaattaatcaattaaactgttcttaaggtaaaattgggaaaataatggttaatgatgattttgaaagaaaaggtgtaagaagcaggttta 14865761  T
Q  201 taatgttgta 210  Q
    ||||||||||    
T  14865760 taatgttgta 14865751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 5 - 122
Target Start/End: Original strand, 13312841 - 13312957
Alignment:
Q  5 aagaccaagagagaagaacctaggaattgatttgttgtgcttttgtctttgcaattctaaggtaagggtgagattatctttcaatagttataatatatga 104  Q
    |||| |||| |||| ||||||||||| ||||||| |||| |||| | | | ||||||||||||||||||||||||||||||||||| | ||||||| | |    
T  13312841 aagaacaagggagatgaacctaggaactgatttgctgtgttttttt-tctacaattctaaggtaagggtgagattatctttcaataatcataatatgtaa 13312939  T
Q  105 tttttgaaaagtaatcaa 122  Q
    |||||||||| |||||||    
T  13312940 tttttgaaaattaatcaa 13312957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 46 - 120
Target Start/End: Original strand, 10389428 - 10389502
Alignment:
Q  46 tttgtctttgcaattctaaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaagtaatc 120  Q
    ||||||||||||||||||||||||||||| ||||||||||||||  ||||||| ||| |||| ||||||||||||    
T  10389428 tttgtctttgcaattctaaggtaagggtgggattatctttcaatgattataatgtataatttctgaaaagtaatc 10389502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 46 - 120
Target Start/End: Original strand, 10414517 - 10414591
Alignment:
Q  46 tttgtctttgcaattctaaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaagtaatc 120  Q
    ||||||||||||||||||||||||||||| ||||||||||||||  ||||||| ||| |||| ||||||||||||    
T  10414517 tttgtctttgcaattctaaggtaagggtgggattatctttcaatgattataatgtataatttctgaaaagtaatc 10414591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 46 - 120
Target Start/End: Original strand, 10421187 - 10421261
Alignment:
Q  46 tttgtctttgcaattctaaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaagtaatc 120  Q
    ||||||||||||||||||||||||||||| ||||||||||||||  ||||||| ||| |||| ||||||||||||    
T  10421187 tttgtctttgcaattctaaggtaagggtgggattatctttcaatgattataatgtataatttctgaaaagtaatc 10421261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 5 - 122
Target Start/End: Original strand, 13302185 - 13302301
Alignment:
Q  5 aagaccaagagagaagaacctaggaattgatttgttgtgcttttgtctttgcaattctaaggtaagggtgagattatctttcaatagttataatatatga 104  Q
    |||| |||| |||| ||||||||||| ||||||| |||| |||| | | | ||||||||||||||||||||||||||||||||||| | ||||||| | |    
T  13302185 aagaacaagggagatgaacctaggaactgatttgctgtgttttttt-tctacaattctaaggtaagggtgagattatctttcaataatcataatatgtaa 13302283  T
Q  105 tttttgaaaagtaatcaa 122  Q
    ||| |||||| |||||||    
T  13302284 tttctgaaaattaatcaa 13302301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 3 - 114
Target Start/End: Original strand, 23370446 - 23370558
Alignment:
Q  3 agaagaccaagagagaagaacctaggaattgatttgttgtgc-ttttgtctttgcaattctaaggtaagggtgagattatctttcaatagttataatata 101  Q
    ||||||||||||||||||||| ||||||  |||||| ||||| |||||||| | ||||||||||||||||||| || ||||| |||||| | ||||| ||    
T  23370446 agaagaccaagagagaagaacttaggaacggatttgctgtgctttttgtctatacaattctaaggtaagggtgggactatctctcaataatcataatcta 23370545  T
Q  102 tgatttttgaaaa 114  Q
    | |||| ||||||    
T  23370546 taatttctgaaaa 23370558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 3 - 77
Target Start/End: Complemental strand, 10555424 - 10555350
Alignment:
Q  3 agaagaccaagagagaagaacctaggaattgatttgttgtgcttttgtctttgcaattctaaggtaagggtgaga 77  Q
    ||||||||||||||||||| | |||| |||||||||| || ||||||| ||| ||||||||||||||||||||||    
T  10555424 agaagaccaagagagaagagcttagggattgatttgtcgtacttttgtgtttacaattctaaggtaagggtgaga 10555350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 5 - 169
Target Start/End: Original strand, 13323732 - 13323896
Alignment:
Q  5 aagaccaagagagaagaacctaggaattgatttgttgtgcttttgtctttgcaattctaaggtaagggtgagattatctttcaatagttataatatatga 104  Q
    |||| |||| |||||||||||||||| ||||||| ||   |||| | | | ||||||||||||||||||||||||||||||||||| | ||||||| | |    
T  13323732 aagaacaagggagaagaacctaggaactgatttgctgatttttttt-tctacaattctaaggtaagggtgagattatctttcaataatcataatatgtaa 13323830  T
Q  105 tttttgaaaagtaatcaattta-actgtt-tttaaggtaaaattggaaaatttagggttaatgatga 169  Q
    ||| |||||| ||||||| ||| | |||| || ||| |||||||||  ||||||||||| |||||||    
T  13323831 tttctgaaaattaatcaaattagattgttcttgaagataaaattgg-gaatttagggttgatgatga 13323896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 46 - 124
Target Start/End: Complemental strand, 51301659 - 51301581
Alignment:
Q  46 tttgtctttgcaattctaaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaagtaatcaatt 124  Q
    |||||||| |||||||||||||||||||||||||||||| ||||| | ||||||| | |||| |||||| |||||||||    
T  51301659 tttgtcttcgcaattctaaggtaagggtgagattatcttccaataatcataatatgtaatttctgaaaattaatcaatt 51301581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 56 - 113
Target Start/End: Original strand, 24933823 - 24933880
Alignment:
Q  56 caattctaaggtaagggtgagattatctttcaatagttataatatatgatttttgaaa 113  Q
    |||||||||||||||||||||| ||||| |||||| | ||||| ||| |||| |||||    
T  24933823 caattctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaa 24933880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 3 - 215
Target Start/End: Complemental strand, 1110 - 898
Alignment:
Q  3 agaagaccaagagagaagaacctaggaattgatttgttgtgcttttgtctttgcaattctaaggtaagggtgagattatctttcaatagttataatatat 102  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||| |||||||| |||||||||    
T  1110 agaagaccaagagagaagaacctaggaattgatttgctgtgcttttgtctttgcaattctaaggtaagggtgggatcatctctcaatagtgataatatat 1011  T
Q  103 gatttttgaaaagtaatcaatttaactgtttttaaggtaaaattggaaaatttagggttaatgatgaatttgaagaaaatgtgtaagaatcaggtttata 202  Q
    ||||| |||||| ||| ||||||||||||| ||| ||||||||||| ||| ||||||||||||  || |||||||||||||||||||| | |||||||||    
T  1010 gatttctgaaaattaagcaatttaactgttcttatggtaaaattgggaaaattagggttaatggcgattttgaagaaaatgtgtaagatttaggtttata 911  T
Q  203 atgttgtatttga 215  Q
    | ||||| |||||    
T  910 aagttgtgtttga 898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 128; Significance: 2e-66; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 3 - 215
Target Start/End: Original strand, 79430 - 79645
Alignment:
Q  3 agaagaccaagagagaagaacctaggaattgattt-gttgtgct-tttgtctttgcaattctaaggtaagggtgagattatctttcaatagttataatat 100  Q
    ||||||||||||||||||||| |||||| |||||| | |||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  79430 agaagaccaagagagaagaacttaggaactgattttgctgtgctatttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatat 79529  T
Q  101 atgatttttgaaaagtaatcaatttaactgtttttaaggtaaaattggaaaatttagggttaatgatgaatttg-aagaaaatgtgtaagaatcaggttt 199  Q
     | |||| |||||| ||||||||| ||||||| ||||||||||||||| ||| | |||||||||||||| |||| ||||||| |||||||||||||||||    
T  79530 gtaatttctgaaaattaatcaattaaactgttcttaaggtaaaattgggaaaataagggttaatgatgattttgaaagaaaaggtgtaagaatcaggttt 79629  T
Q  200 ataatgttgtatttga 215  Q
    ||||||||||||||||    
T  79630 ataatgttgtatttga 79645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 126; Significance: 4e-65; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 3 - 210
Target Start/End: Original strand, 20851073 - 20851282
Alignment:
Q  3 agaagaccaagagagaagaacctaggaattgatttgttgtgctttt-gtctttgcaattctaaggtaagggtgagattatctttcaatagttataatata 101  Q
    ||||||||||||||||||||| |||||| ||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  20851073 agaagaccaagagagaagaacttaggaactgatttgctgtgctttttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatata 20851172  T
Q  102 tgatttttgaaaagtaatcaatttaactgtttttaaggtaaaattggaaaatttagggttaatgatgaatttg-aagaaaatgtgtaagaatcaggttta 200  Q
    | |||| |||||| ||||||||| ||||||| ||||||||||||||| |||||||||||||| ||||| |||| ||||||| || |||| ||||||||||    
T  20851173 taatttctgaaaattaatcaattgaactgttcttaaggtaaaattgggaaatttagggttaaggatgattttgaaagaaaaggtataaggatcaggttta 20851272  T
Q  201 taatgttgta 210  Q
    || |||||||    
T  20851273 tattgttgta 20851282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 3 - 210
Target Start/End: Original strand, 20857700 - 20857909
Alignment:
Q  3 agaagaccaagagagaagaacctaggaattgatttgttgtgctttt-gtctttgcaattctaaggtaagggtgagattatctttcaatagttataatata 101  Q
    ||||||||||||||||||||| |||||| ||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  20857700 agaagaccaagagagaagaacttaggaactgatttgctgtgctttttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatata 20857799  T
Q  102 tgatttttgaaaagtaatcaatttaactgtttttaaggtaaaattggaaaatttagggttaatgatgaatttg-aagaaaatgtgtaagaatcaggttta 200  Q
    | |||| |||||| ||||||||| ||||||| ||||||||||||||| |||||||||||||| ||||| |||| ||||||| || |||| ||||||||||    
T  20857800 taatttctgaaaattaatcaattgaactgttcttaaggtaaaattgggaaatttagggttaaggatgattttgaaagaaaaggtataaggatcaggttta 20857899  T
Q  201 taatgttgta 210  Q
    || |||||||    
T  20857900 tattgttgta 20857909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 3 - 210
Target Start/End: Complemental strand, 21706390 - 21706181
Alignment:
Q  3 agaagaccaagagagaagaacctaggaattgatttgttgtgctttt-gtctttgcaattctaaggtaagggtgagattatctttcaatagttataatata 101  Q
    ||||||||||||||||||||| |||||| ||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  21706390 agaagaccaagagagaagaacttaggaactgatttgctgtgctttttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatata 21706291  T
Q  102 tgatttttgaaaagtaatcaatttaactgtttttaaggtaaaattggaaaatttagggttaatgatgaatttg-aagaaaatgtgtaagaatcaggttta 200  Q
    | |||| |||||| ||||||||| ||||||| ||||||||||||||| |||||||||||||| ||||| |||| ||||||| || |||| ||||||||||    
T  21706290 taatttctgaaaattaatcaattgaactgttcttaaggtaaaattgggaaatttagggttaaggatgattttgaaagaaaaggtataaggatcaggttta 21706191  T
Q  201 taatgttgta 210  Q
    || |||||||    
T  21706190 tattgttgta 21706181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 3 - 207
Target Start/End: Complemental strand, 21710932 - 21710726
Alignment:
Q  3 agaagaccaagagagaagaacctaggaattgatttgttgtgctttt-gtctttgcaattctaaggtaagggtgagattatctttcaatagttataatata 101  Q
    ||||||||||||||||||||| |||||| ||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  21710932 agaagaccaagagagaagaacttaggaactgatttgctgtgctttttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatata 21710833  T
Q  102 tgatttttgaaaagtaatcaatttaactgtttttaaggtaaaattggaaaatttagggttaatgatgaatttg-aagaaaatgtgtaagaatcaggttta 200  Q
    | |||| |||||| ||||||||| ||||||| ||||||||||||||| |||||||||||| | ||||| |||| ||||||| || |||| ||||||||||    
T  21710832 taatttctgaaaattaatcaattgaactgttcttaaggtaaaattgggaaatttagggtttaagatgattttgaaagaaaaagtataaggatcaggttta 21710733  T
Q  201 taatgtt 207  Q
    |||||||    
T  21710732 taatgtt 21710726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 122; Significance: 9e-63; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 3 - 210
Target Start/End: Original strand, 24320611 - 24320820
Alignment:
Q  3 agaagaccaagagagaagaacctaggaattgatttgttgtgctttt-gtctttgcaattctaaggtaagggtgagattatctttcaatagttataatata 101  Q
    ||||||||||||||||||||| |||||| ||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  24320611 agaagaccaagagagaagaacttaggaactgatttgctgtgctttttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatata 24320710  T
Q  102 tgatttttgaaaagtaatcaatttaactgtttttaaggtaaaattggaaaatttagggttaatgatgaatttg-aagaaaatgtgtaagaatcaggttta 200  Q
    | |||| |||||| ||||||||| ||||||| ||||||||||||||| |||||||||||||| ||||| |||| ||||||| || || | ||||||||||    
T  24320711 taatttctgaaaattaatcaattgaactgttcttaaggtaaaattgggaaatttagggttaaggatgattttgaaagaaaaggtatagggatcaggttta 24320810  T
Q  201 taatgttgta 210  Q
    || |||||||    
T  24320811 tattgttgta 24320820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 62 - 122
Target Start/End: Original strand, 29643386 - 29643446
Alignment:
Q  62 taaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaagtaatcaa 122  Q
    ||||||||||||||||||||||||||||| | ||||||| | |||| |||||| |||||||    
T  29643386 taaggtaagggtgagattatctttcaataatcataatatgtaatttctgaaaattaatcaa 29643446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 114
Target Start/End: Complemental strand, 44477693 - 44477625
Alignment:
Q  46 tttgtctttgcaattctaaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaa 114  Q
    ||||||||  |||||||||||||||||||||| ||||| |||||| | ||||| ||| |||| ||||||    
T  44477693 tttgtcttcacaattctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaa 44477625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 114
Target Start/End: Complemental strand, 44492851 - 44492783
Alignment:
Q  46 tttgtctttgcaattctaaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaa 114  Q
    ||||||||  |||||||||||||||||||||| ||||| |||||| | ||||| ||| |||| ||||||    
T  44492851 tttgtcttcacaattctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaa 44492783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 120; Significance: 1e-61; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 3 - 215
Target Start/End: Complemental strand, 16091190 - 16090975
Alignment:
Q  3 agaagaccaagagagaagaacctaggaattgattt-gttgtgct-tttgtctttgcaattctaaggtaagggtgagattatctttcaatagttataatat 100  Q
    ||||||||||||||||||||| |||||| |||||| | |||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  16091190 agaagaccaagagagaagaacttaggaactgattttgctgtgctatttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatat 16091091  T
Q  101 atgatttttgaaaagtaatcaatttaactgtttttaaggtaaaattggaaaatttagggttaatgatgaatttg-aagaaaatgtgtaagaatcaggttt 199  Q
     | |||| |||||  ||||||||| |||||||  |||||||||||||| ||| | |||||||||||||| |||| ||||||| |||||||||||||||||    
T  16091090 gtaatttctgaaagttaatcaattaaactgttcctaaggtaaaattgggaaaataagggttaatgatgattttgaaagaaaaggtgtaagaatcaggttt 16090991  T
Q  200 ataatgttgtatttga 215  Q
    ||||||||||||||||    
T  16090990 ataatgttgtatttga 16090975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 3 - 215
Target Start/End: Original strand, 29181049 - 29181264
Alignment:
Q  3 agaagaccaagagagaagaacctaggaattgattt-gttgtgct-tttgtctttgcaattctaaggtaagggtgagattatctttcaatagttataatat 100  Q
    ||||||||||||||||||||| |||||| |||||| | |||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  29181049 agaagaccaagagagaagaacttaggaactgattttgctgtgctatttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatat 29181148  T
Q  101 atgatttttgaaaagtaatcaatttaactgtttttaaggtaaaattggaaaatttagggttaatgatgaatttg-aagaaaatgtgtaagaatcaggttt 199  Q
     | |||| |||||| ||||||||| |||| || ||||||||||||| | ||| | |||||||||||||| |||| ||||||| |||||||||||||| ||    
T  29181149 gtaatttctgaaaattaatcaattaaactattcttaaggtaaaatttggaaaataagggttaatgatgattttgaaagaaaaggtgtaagaatcaggctt 29181248  T
Q  200 ataatgttgtatttga 215  Q
    ||||||||||||||||    
T  29181249 ataatgttgtatttga 29181264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 3 - 210
Target Start/End: Original strand, 20906402 - 20906610
Alignment:
Q  3 agaagaccaagagagaagaacctaggaattgatttgttgtgct-tttgtctttgcaattctaaggtaagggtgagattatctttcaatagttataatata 101  Q
    ||||||||||||||||||||| ||||||  |||||| || ||| |||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  20906402 agaagaccaagagagaagaacttaggaacggatttgctgagctatttgtccttgcaattctaaggtaagggtgggattatctttcaatagtcataatata 20906501  T
Q  102 tgatttttgaaaagtaatcaatttaactgtttttaaggtaaaattggaaaatttagggttaatgatgaatttg-aagaaaatgtgtaagaatcaggttta 200  Q
    | |||| |||||| ||||||||| |||| || |||||||||||||||  |||| |||||||||||||| |||| ||||||| || ||||||||| |||||    
T  20906502 taatttctgaaaattaatcaattgaactattcttaaggtaaaattgg-gaattaagggttaatgatgattttgaaagaaaaggtataagaatcaagttta 20906600  T
Q  201 taatgttgta 210  Q
    ||||||||||    
T  20906601 taatgttgta 20906610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 3 - 148
Target Start/End: Complemental strand, 2971368 - 2971222
Alignment:
Q  3 agaagaccaagagagaagaacctaggaattgatttgttgtgctttt-gtctttgcaattctaaggtaagggtgagattatctttcaatagttataatata 101  Q
    ||||||||||||||||||||| |||||| ||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||| ||    
T  2971368 agaagaccaagagagaagaacttaggaactgatttgctgtgctttttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataattta 2971269  T
Q  102 tgatttttgaaaagtaatcaatttaactgtttttaaggtaaaattgg 148  Q
    | |||| |||||| ||||||||| ||||||| |||||||||||||||    
T  2971268 taatttctgaaaattaatcaattgaactgttcttaaggtaaaattgg 2971222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 3 - 215
Target Start/End: Complemental strand, 2465473 - 2465262
Alignment:
Q  3 agaagaccaagagagaagaacctaggaattgatttgttgtgcttttgtctttgcaattctaaggtaagggtgagattatctttcaatagttataatatat 102  Q
    ||||||||||||||||||| | ||| ||||| |||| ||  ||||  ||||||||||||||||||||||||| ||| ||| ||||||| | |||||||||    
T  2465473 agaagaccaagagagaagagcttagaaattggtttgctgcacttta-tctttgcaattctaaggtaagggtgggatcatccttcaataatgataatatat 2465375  T
Q  103 gatttttgaaaagtaatcaatttaactgtttttaaggtaaaa-ttggaaaatttagggttaatgatgaatttgaagaaaatgtgtaagaatcaggtttat 201  Q
    ||||| |||||| ||| ||||||||||||||||| ||||||| |||| ||||| ||||||||||   | |||||||||||||||||||| | ||||||||    
T  2465374 gatttctgaaaattaagcaatttaactgtttttatggtaaaaattgggaaatt-agggttaatggcaattttgaagaaaatgtgtaagatttaggtttat 2465276  T
Q  202 aatgttgtatttga 215  Q
    |||||| |||||||    
T  2465275 aatgttatatttga 2465262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 3 - 215
Target Start/End: Original strand, 3857309 - 3857520
Alignment:
Q  3 agaagaccaagagagaagaacctaggaattgatttgttgtgcttttgtctttgcaattctaaggtaagggtgagattatctttcaatagttataatatat 102  Q
    ||||||||||||||||||| | ||| ||||| |||| ||  ||||  |||| |||||||||||||||||||| ||| ||||| ||||| | |||||||||    
T  3857309 agaagaccaagagagaagagcttagaaattggtttgctgcacttta-tctt-gcaattctaaggtaagggtgggatcatctt-caataatgataatatat 3857405  T
Q  103 gatttttgaaaagtaatcaatttaactgtttttaaggtaaaa---ttggaaaatttagggttaatgatgaatttgaagaaaatgtgtaagaatcaggttt 199  Q
    ||||| |||||| ||| ||||||||||||||||| |||||||   |||| ||||| ||||||||||   | |||||||||||||||||||| | ||||||    
T  3857406 gatttctgaaaattaagcaatttaactgtttttatggtaaaaaaattgggaaatt-agggttaatggcaattttgaagaaaatgtgtaagatttaggttt 3857504  T
Q  200 ataatgttgtatttga 215  Q
    ||||||||||||||||    
T  3857505 ataatgttgtatttga 3857520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 3 - 120
Target Start/End: Original strand, 14319570 - 14319688
Alignment:
Q  3 agaagaccaagagagaagaacctaggaattgatttgttgtgctttt-gtctttgcaattctaaggtaagggtgagattatctttcaatagttataatata 101  Q
    ||||||| ||||||||||||| ||||||  |||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||  || |||| ||    
T  14319570 agaagactaagagagaagaacttaggaacggatttgctgtgctttttgtctttgcaattctaaggtaagggtgggattatctttcaatgattttaatgta 14319669  T
Q  102 tgatttttgaaaagtaatc 120  Q
    | |||| |||||| |||||    
T  14319670 taatttctgaaaattaatc 14319688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 3 - 89
Target Start/End: Complemental strand, 14230895 - 14230808
Alignment:
Q  3 agaagaccaagagagaagaacctaggaattgatttgttgtgctttt-gtctttgcaattctaaggtaagggtgagattatctttcaat 89  Q
    ||||||||||||||| ||||| ||||||  ||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  14230895 agaagaccaagagaggagaacttaggaacggatttgtcgtgctttttgtctttgcaattctaaggtaagggtgggattatctttcaat 14230808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 3 - 114
Target Start/End: Complemental strand, 31155509 - 31155396
Alignment:
Q  3 agaagaccaagagagaagaacctag-gaattgatttgttgtgcttt---tgtctttgcaattctaaggtaagggtgagattatctttcaatagttataat 98  Q
    ||||||||||||||||||||| ||| |||| |||| |||| |||||   ||||||||||||||||||||||||||| ||||||||||||||  |||||||    
T  31155509 agaagaccaagagagaagaac-tagagaatcgatt-gttgagctttctttgtctttgcaattctaaggtaagggtgggattatctttcaatgattataat 31155412  T
Q  99 atatgatttttgaaaa 114  Q
    |||| |||| ||||||    
T  31155411 atataatttctgaaaa 31155396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 5 - 114
Target Start/End: Complemental strand, 14567316 - 14567206
Alignment:
Q  5 aagaccaagagagaagaacctaggaattgatttgttgtgctttt-gtctttgcaattctaaggtaagggtgagattatctttcaatagttataatatatg 103  Q
    ||||||||||||||||||| ||||||  |||||| ||||||||| |||| | |||||||||||||||||||||  || | ||||||  ||||||||||||    
T  14567316 aagaccaagagagaagaacttaggaacggatttgctgtgctttttgtctctacaattctaaggtaagggtgaggctaaccttcaatgattataatatatg 14567217  T
Q  104 atttttgaaaa 114  Q
     ||| ||||||    
T  14567216 gtttctgaaaa 14567206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 114
Target Start/End: Original strand, 11382871 - 11382923
Alignment:
Q  62 taaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaa 114  Q
    |||||||||||||||| ||||| |||||| | ||||||||| |||| ||||||    
T  11382871 taaggtaagggtgagactatctctcaataatcataatatataatttctgaaaa 11382923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 114
Target Start/End: Original strand, 11389348 - 11389400
Alignment:
Q  62 taaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaa 114  Q
    |||||||||||||||| ||||| |||||| | ||||||||| |||| ||||||    
T  11389348 taaggtaagggtgagactatctctcaataatcataatatataatttctgaaaa 11389400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 114
Target Start/End: Complemental strand, 13679548 - 13679496
Alignment:
Q  62 taaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaa 114  Q
    |||||||||||||||| |||||||||||  | || |||||| |||||||||||    
T  13679548 taaggtaagggtgagactatctttcaatgatcatgatatataatttttgaaaa 13679496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 114
Target Start/End: Original strand, 21230952 - 21231012
Alignment:
Q  54 tgcaattctaaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaa 114  Q
    ||||| |||||||||||||||||| ||||| |||||| | ||| ||||| |||| ||||||    
T  21230952 tgcaaatctaaggtaagggtgagactatctctcaataatcatagtatataatttctgaaaa 21231012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 3 - 215
Target Start/End: Original strand, 49910 - 50126
Alignment:
Q  3 agaagaccaagagagaagaacctaggaattgattt-gttgtgct-tttgtctttgcaattctaaggtaagggtgagattatctttcaatagttataatat 100  Q
    |||| |||||||||||||||| |||||| |||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  49910 agaaaaccaagagagaagaacttaggaactgattttgttgtgctatttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatat 50009  T
Q  101 atgatttttgaaaagtaatcaatttaactgtttttaaggt-aaaattggaaaatttagggttaatgatgaatttg-aagaaaatgtgtaagaatcaggtt 198  Q
     | |||| | |||| ||||||||| ||||||| ||||||| |||||||| ||| | |||||||||||||| |||| ||||||| ||||||||||||||||    
T  50010 gtaatttctaaaaattaatcaattaaactgttcttaaggtaaaaattgggaaaataagggttaatgatgattttgaaagaaaaggtgtaagaatcaggtt 50109  T
Q  199 tataatgttgtatttga 215  Q
    ||||||||| |||||||    
T  50110 tataatgttatatttga 50126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 111; Significance: 3e-56; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 3 - 210
Target Start/End: Complemental strand, 135552 - 135343
Alignment:
Q  3 agaagaccaagagagaagaacctaggaattgatttgttgtgct-tttgtctttgcaattctaaggtaagggtgagattatctttcaatagttataatata 101  Q
    ||||||||||||||||||| | |||||| ||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  135552 agaagaccaagagagaagagcttaggaactgatttgctgtgctatttgtctttgcaattctaaggtaagcgtgagattatctttcaatagtcataatata 135453  T
Q  102 tgatttttgaaaagtaatcaatttaactgtttttaa-ggtaaaattggaaaatttagggttaatgatgaatttg-aagaaaatgtgtaagaatcaggttt 199  Q
    | |||| |||||| ||||||||| ||||||| |||| |||||||||| | |||| |||||||||||||| |||| ||||||| |||||||||||||||||    
T  135452 taatttctgaaaattaatcaattgaactgttcttaaaggtaaaattg-agaattaagggttaatgatgattttgaaagaaaaggtgtaagaatcaggttt 135354  T
Q  200 ataatgttgta 210  Q
    ||  |||||||    
T  135353 attgtgttgta 135343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 107; Significance: 8e-54; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 46 - 215
Target Start/End: Original strand, 16146815 - 16146985
Alignment:
Q  46 tttgtctttgcaattctaaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaagtaatcaatttaactgtttttaaggtaaaat 145  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| | |||| |||||| ||||||||| ||||||| ||||||||||||    
T  16146815 tttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaattaatcaattaaactgttcttaaggtaaaat 16146914  T
Q  146 tggaaaatttagggttaatgatgaatttg-aagaaaatgtgtaagaatcaggtttataatgttgtatttga 215  Q
    | | ||| | |||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||    
T  16146915 ttggaaaataagggttaatgatgattttgaaagaaaaggtgtaagaatcaggtttataatgttgtatttga 16146985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 90
Target Start/End: Complemental strand, 53483775 - 53483731
Alignment:
Q  46 tttgtctttgcaattctaaggtaagggtgagattatctttcaata 90  Q
    |||||||| ||||||||||||||||||||||| ||||| ||||||    
T  53483775 tttgtcttcgcaattctaaggtaagggtgagactatctctcaata 53483731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 119
Target Start/End: Complemental strand, 27906328 - 27906263
Alignment:
Q  54 tgcaattctaaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaagtaat 119  Q
    |||||||||||| |||||||| ||||||||||||||  | ||||| ||| |||| |||||| ||||    
T  27906328 tgcaattctaagataagggtgggattatctttcaatgatcataatgtataatttctgaaaattaat 27906263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 105; Significance: 1e-52; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 13 - 176
Target Start/End: Original strand, 25180880 - 25181044
Alignment:
Q  13 gagagaagaacctaggaattgatttgttgtgctttt-gtctttgcaattctaaggtaagggtgagattatctttcaatagttataatatatgatttttga 111  Q
    ||||||||||| |||||| ||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||| |||    
T  25180880 gagagaagaacttaggaactgatttgctgtgctttttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctga 25180979  T
Q  112 aaagtaatcaatttaactgtttttaaggtaaaattggaaaatttagggttaatgatgaatttgaa 176  Q
    ||| ||||||||| ||||||| ||||||||||||||| |||||||||||||| ||||| ||||||    
T  25180980 aaattaatcaattgaactgttcttaaggtaaaattgggaaatttagggttaaggatgattttgaa 25181044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 15 - 210
Target Start/End: Complemental strand, 10679 - 10482
Alignment:
Q  15 gagaagaacctaggaattgatttgttgtgctttt-gtctttgcaattctaaggtaagggtgagattatctttcaatagttataatatatgatttttgaaa 113  Q
    |||||| || |||||| ||||||| ||||||||| ||||||| |||||||||||||||||| ||||||||||||||||| ||||||||| |||| |||||    
T  10679 gagaaggacttaggaactgatttgctgtgctttttgtctttgaaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaa 10580  T
Q  114 agtaatcaatttaactgtttttaaggtaaaattggaaaatttagggttaatgatgaatttg-aagaaaatgtgtaagaatcaggtttataatgttgta 210  Q
    | ||||||||| || |||| ||||||||||||||| |||||||||||||| ||||| |||| ||||||| || || | || ||||||||| |||||||    
T  10579 attaatcaattgaattgttcttaaggtaaaattgggaaatttagggttaaggatgattttgaaagaaaaggtatagggataaggtttatattgttgta 10482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 3 - 120
Target Start/End: Original strand, 27207660 - 27207778
Alignment:
Q  3 agaagaccaagagagaagaacctaggaattgatttgttgtgctttt-gtctttgcaattctaaggtaagggtgagattatctttcaatagttataatata 101  Q
    ||||||||||||||||||||| ||||||  |||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||  || |||| ||    
T  27207660 agaagaccaagagagaagaacttaggaacggatttgctgtgctttttgtctttgcaattctaaggtaagggtgggattatctttcaatgattttaatgta 27207759  T
Q  102 tgatttttgaaaagtaatc 120  Q
    | |||| |||||| |||||    
T  27207760 taatttctgaaaattaatc 27207778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 3 - 90
Target Start/End: Complemental strand, 26885296 - 26885208
Alignment:
Q  3 agaagaccaagagagaagaacctaggaattgatttgttgtgctttt-gtctttgcaattctaaggtaagggtgagattatctttcaata 90  Q
    |||| |||||||||||||||| ||||||  |||||| ||||||||| |||| ||||||||||||||||||||| |||||||||||||||    
T  26885296 agaaaaccaagagagaagaacttaggaacggatttgatgtgctttttgtctctgcaattctaaggtaagggtgggattatctttcaata 26885208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 3 - 87
Target Start/End: Original strand, 23168240 - 23168324
Alignment:
Q  3 agaagaccaagagagaagaacctaggaattgatttgttgtgcttttgtctttgcaattctaaggtaagggtgagattatctttca 87  Q
    ||||||||||||||||||||| |||| |  | |||| ||||||||||| | ||||||||||||||||||||| ||||||||||||    
T  23168240 agaagaccaagagagaagaacttagggacggttttgctgtgcttttgtttctgcaattctaaggtaagggtgggattatctttca 23168324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 3 - 87
Target Start/End: Original strand, 23579497 - 23579581
Alignment:
Q  3 agaagaccaagagagaagaacctaggaattgatttgttgtgcttttgtctttgcaattctaaggtaagggtgagattatctttca 87  Q
    ||||||||||||||||||||| |||| |  | |||| ||||||||||| | ||||||||||||||||||||| ||||||||||||    
T  23579497 agaagaccaagagagaagaacttagggacggttttgctgtgcttttgtttctgcaattctaaggtaagggtgggattatctttca 23579581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 79
Target Start/End: Original strand, 27366533 - 27366566
Alignment:
Q  46 tttgtctttgcaattctaaggtaagggtgagatt 79  Q
    ||||||||||||||||||||||||||||||||||    
T  27366533 tttgtctttgcaattctaaggtaagggtgagatt 27366566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 46 - 83
Target Start/End: Original strand, 5706008 - 5706045
Alignment:
Q  46 tttgtctttgcaattctaaggtaagggtgagattatct 83  Q
    |||||||| ||||||||||||||||||||||| |||||    
T  5706008 tttgtcttcgcaattctaaggtaagggtgagactatct 5706045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0384 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: scaffold0384
Description:

Target: scaffold0384; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 56 - 215
Target Start/End: Original strand, 16059 - 16218
Alignment:
Q  56 caattctaaggtaagggtgagattatctttcaatagttataatatatgatttttg-aaaagtaatcaatttaactgtttttaaggt-aaaattggaaaat 153  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||| | ||||||||  |||    
T  16059 caattctaaggtaagggtgggattatctttcaatagttataatatatgatttctgaaaaattaatcaatttaactgtttttaagataaaaattgg--aat 16156  T
Q  154 ttagggttaatgatgaatttgaagaaaatgtgtaagaatcaggtttataatgttgtatttga 215  Q
    |||||||||||||||| ||||||||||||||| |||||||||||| || |||||||||||||    
T  16157 ttagggttaatgatgattttgaagaaaatgtgcaagaatcaggttcatgatgttgtatttga 16218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1318 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: scaffold1318
Description:

Target: scaffold1318; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 3 - 210
Target Start/End: Original strand, 1853 - 2062
Alignment:
Q  3 agaagaccaagagagaagaacctaggaattgatttgttgtgctttt-gtctttgcaattctaaggtaagggtgagattatctttcaatagttataatata 101  Q
    ||||||||||||||||||||| ||||||  |||||| ||||||||| |||||||||||| ||||||||||||| ||||||||||||||||| ||||||||    
T  1853 agaagaccaagagagaagaacttaggaacggatttgctgtgctttttgtctttgcaattgtaaggtaagggtgggattatctttcaatagtcataatata 1952  T
Q  102 tgatttttgaaaagtaatcaatttaactgtt-tttaaggtaaaattggaaaatttagggttaatgatgaatttg-aagaaaatgtgtaagaatcaggttt 199  Q
    | |||| |||||| ||||||||| ||||||| || || ||||||||||  |||| |||||||||||||| |||| ||||||| |||||||||| ||||||    
T  1953 taatttctgaaaattaatcaattgaactgttcttgaaagtaaaattgg-gaattaagggttaatgatgattttgaaagaaaaggtgtaagaattaggttt 2051  T
Q  200 ataatgttgta 210  Q
    ||  |||||||    
T  2052 attgtgttgta 2062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 3 - 215
Target Start/End: Original strand, 91145 - 91358
Alignment:
Q  3 agaagaccaagagagaagaacctaggaattgatttgttgtgcttttgtctttgcaattctaaggtaagggtgagattatctttcaatagttataatatat 102  Q
    ||||||||||||||||||| | ||| ||||| |||| ||  ||||  ||||||||||||||||||||||||| ||| ||||||||||| | |||||||||    
T  91145 agaagaccaagagagaagagcttagaaattggtttgctgcacttta-tctttgcaattctaaggtaagggtgggatcatctttcaataatgataatatat 91243  T
Q  103 gatttttgaaaagtaatcaatttaactgtttttaaggt---aaaattggaaaatttagggttaatgatgaatttgaagaaaatgtgtaagaatcaggttt 199  Q
    ||||| |||||| ||| ||||||||||||||||| |||   |||||||| ||| ||||||||||||   | |||||||||||||||||||| | ||||||    
T  91244 gatttctgaaaattaagcaatttaactgtttttatggtaaaaaaattgggaaa-ttagggttaatggcaattttgaagaaaatgtgtaagatttaggttt 91342  T
Q  200 ataatgttgtatttga 215  Q
    ||||||||||||||||    
T  91343 ataatgttgtatttga 91358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 3 - 215
Target Start/End: Original strand, 96871 - 97084
Alignment:
Q  3 agaagaccaagagagaagaacctaggaattgatttgttgtgcttttgtctttgcaattctaaggtaagggtgagattatctttcaatagttataatatat 102  Q
    ||||||||||||||||||| | ||| ||||| |||| ||  ||||  ||||||||||||||||||||||||| ||| ||||||||||| | |||||||||    
T  96871 agaagaccaagagagaagagcttagaaattggtttgctgcacttta-tctttgcaattctaaggtaagggtgggatcatctttcaataatgataatatat 96969  T
Q  103 gatttttgaaaagtaatcaatttaactgtttttaaggt---aaaattggaaaatttagggttaatgatgaatttgaagaaaatgtgtaagaatcaggttt 199  Q
    ||||| |||||| ||| ||||||||||||||||| |||   |||||||| ||| ||||||||||||   | |||||||||||||||||||| | ||||||    
T  96970 gatttctgaaaattaagcaatttaactgtttttatggtaaaaaaattgggaaa-ttagggttaatggcaattttgaagaaaatgtgtaagatttaggttt 97068  T
Q  200 ataatgttgtatttga 215  Q
    ||||||||||||||||    
T  97069 ataatgttgtatttga 97084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1469 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: scaffold1469
Description:

Target: scaffold1469; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 46 - 207
Target Start/End: Complemental strand, 1425 - 1264
Alignment:
Q  46 tttgtctttgcaattctaaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaagtaatcaatttaactgtttttaaggtaaaat 145  Q
    ||||||||||||||||||||||||||||| ||||  |||||||||||  ||||||||| ||| |||||| ||| ||||||||||||| ||||||||||||    
T  1425 tttgtctttgcaattctaaggtaagggtgggatttcctttcaatagtgttaatatatgctttctgaaaattaaacaatttaactgttcttaaggtaaaat 1326  T
Q  146 tggaaaatttagggttaatgatgaatttgaagaaaatgtgtaagaatcaggtttataatgtt 207  Q
    ||| ||| |||||  ||||||||| ||||||||||||| |||||| ||||||||| ||||||    
T  1325 tgggaaaattaggtctaatgatgattttgaagaaaatgcgtaagattcaggtttacaatgtt 1264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0348 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0348
Description:

Target: scaffold0348; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 56 - 210
Target Start/End: Complemental strand, 9396 - 9241
Alignment:
Q  56 caattctaaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaagtaatcaatttaactgtt-tttaaggtaaaattggaaaatt 154  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||| |||| |||||| ||||||||| ||||||| || || ||||||||||  ||||    
T  9396 caattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaattaatcaattgaactgttcttaaaagtaaaattgg-gaatt 9298  T
Q  155 tagggttaatgatgaatttg-aagaaaatgtgtaagaatcaggtttataatgttgta 210  Q
     |||||||||||||| |||| ||||||| |||||||||| ||||||||  |||||||    
T  9297 aagggttaatgatgattttgaaagaaaaggtgtaagaattaggtttattgtgttgta 9241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0183 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0183
Description:

Target: scaffold0183; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 3 - 114
Target Start/End: Complemental strand, 116 - 6
Alignment:
Q  3 agaagaccaagagagaagaacctaggaattgatttgttgtgcttttgtctttgcaattctaaggtaagggtgagattatctttcaatagttataatatat 102  Q
    ||||||||||||||||||| | |||||||||| ||| ||  ||||  ||||||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  116 agaagaccaagagagaagagcttaggaattgacttgctgcacttta-tctttgcaattctaaggtaagggtgggattatctttcaatagttctaatatat 18  T
Q  103 gatttttgaaaa 114  Q
    ||||| ||||||    
T  17 gatttctgaaaa 6  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 63; Significance: 1e-27; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 3 - 124
Target Start/End: Complemental strand, 10353 - 10231
Alignment:
Q  3 agaagaccaagagagaagaacctaggaattgatttgttgtgctttt-gtctttgcaattctaaggtaagggtgagattatctttcaatagttataatata 101  Q
    ||||||||||||||||||||| ||||||  |||||| ||||||||| |||| | ||||||||||||||||||||||||||||| ||||| | |||||||     
T  10353 agaagaccaagagagaagaacttaggaacggatttgctgtgctttttgtctctacaattctaaggtaagggtgagattatcttccaataatcataatatg 10254  T
Q  102 tgatttttgaaaagtaatcaatt 124  Q
    | |||| |||||| |||||||||    
T  10253 taatttctgaaaattaatcaatt 10231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 3 - 90
Target Start/End: Original strand, 492969 - 493057
Alignment:
Q  3 agaagaccaagagagaagaacctaggaattgatttgttgtgctttt-gtctttgcaattctaaggtaagggtgagattatctttcaata 90  Q
    ||||||||||||||||||||| ||||||  |||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  492969 agaagaccaagagagaagaacttaggaacggatttgctgtgctttttgtctctgcaattctaaggtaagggtgagattatctttcaata 493057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0720 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: scaffold0720
Description:

Target: scaffold0720; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 3 - 120
Target Start/End: Original strand, 3343 - 3461
Alignment:
Q  3 agaagaccaagagagaagaacctaggaattgatttgttgtgctttt-gtctttgcaattctaaggtaagggtgagattatctttcaatagttataatata 101  Q
    ||||||||||||||| ||||| ||||||  ||||||  |||||||| ||||||||||||||||||||||||||| |||||||||||||   | |||||||    
T  3343 agaagaccaagagaggagaacttaggaacggatttgccgtgctttttgtctttgcaattctaaggtaagggtgatattatctttcaatgaatttaatata 3442  T
Q  102 tgatttttgaaaagtaatc 120  Q
    | |||| |||||| |||||    
T  3443 taatttctgaaaattaatc 3461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0609 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0609
Description:

Target: scaffold0609; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 46 - 120
Target Start/End: Original strand, 5842 - 5916
Alignment:
Q  46 tttgtctttgcaattctaaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaagtaatc 120  Q
    ||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||| |||| |||||| |||||    
T  5842 tttgtctttgcaattctaaggtaagggtgggattatctttcaatgattataatatataatttctgaaaattaatc 5916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0553 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: scaffold0553
Description:

Target: scaffold0553; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 3 - 114
Target Start/End: Original strand, 10136 - 10248
Alignment:
Q  3 agaagaccaagagagaagaacctaggaattgatttgttgtgc-ttttgtctttgcaattctaaggtaagggtgagattatctttcaatagttataatata 101  Q
    ||||||||||||||||||||| ||||||  |||||| ||||| |||||||| | ||||||||||||||||||| || ||||| |||||| | ||||| ||    
T  10136 agaagaccaagagagaagaacttaggaacggatttgctgtgctttttgtctatacaattctaaggtaagggtgggactatctctcaataatcataatcta 10235  T
Q  102 tgatttttgaaaa 114  Q
    | |||| ||||||    
T  10236 taatttctgaaaa 10248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0544 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: scaffold0544
Description:

Target: scaffold0544; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 3 - 114
Target Start/End: Original strand, 1466 - 1578
Alignment:
Q  3 agaagaccaagagagaagaacctaggaattgatttgttgtgc-ttttgtctttgcaattctaaggtaagggtgagattatctttcaatagttataatata 101  Q
    ||||||||||||||||||||| ||||||  |||||| ||||| |||||||| | ||||||||||||||||||| || ||||| |||||| | ||||| ||    
T  1466 agaagaccaagagagaagaacttaggaacggatttgctgtgctttttgtctatacaattctaaggtaagggtgggactatctctcaataatcataatcta 1565  T
Q  102 tgatttttgaaaa 114  Q
    | |||| ||||||    
T  1566 taatttctgaaaa 1578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0249 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: scaffold0249
Description:

Target: scaffold0249; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 46 - 114
Target Start/End: Original strand, 13879 - 13947
Alignment:
Q  46 tttgtctttgcaattctaaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaa 114  Q
    ||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||| |||| ||||||    
T  13879 tttgtctttgcaattctaaggtaagggtgggattatctttcaatgattataatatataatttctgaaaa 13947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0099 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0099
Description:

Target: scaffold0099; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 63 - 214
Target Start/End: Complemental strand, 13019 - 12857
Alignment:
Q  63 aaggtaagggtgagattatcttt-caatagttataatatatgatttttgaaaagt-aatcaa---tttaactgtttttaa-ggtaaaatt--ggaaaatt 154  Q
    |||||||||||| |||||||||| |||||||| ||||||||||||| | |||| | |||| |   |||||||||| |||| ||||||| |  || |||||    
T  13019 aaggtaagggtgggattatctttacaatagttctaatatatgatttctaaaaaattaatctaaattttaactgttcttaaaggtaaaaattggggaaatt 12920  T
Q  155 tagggttaatg-atgaatttgaagaaaatgtgt-aagaatc-aggtttataatgttgtatttg 214  Q
    ||||||||||| |||| | ||||| |||||||| ||||||| |||||||||||||||||||||    
T  12919 tagggttaatgtatgattctgaaggaaatgtgttaagaatctaggtttataatgttgtatttg 12857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 46 - 114
Target Start/End: Complemental strand, 111756 - 111688
Alignment:
Q  46 tttgtctttgcaattctaaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaa 114  Q
    |||||||| ||||||||||||||||||||||| ||||| |||||| | ||||| ||| |||| ||||||    
T  111756 tttgtcttcgcaattctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaa 111688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0261 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0261
Description:

Target: scaffold0261; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 120
Target Start/End: Original strand, 23562 - 23628
Alignment:
Q  54 tgcaattctaaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaagtaatc 120  Q
    ||||||||||||||||||||| |||||||||| |||  | ||||| ||| |||| |||||| |||||    
T  23562 tgcaattctaaggtaagggtgggattatctttgaatgatcataatgtataatttctgaaaattaatc 23628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 61 - 114
Target Start/End: Complemental strand, 18225 - 18172
Alignment:
Q  61 ctaaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaa 114  Q
    ||||||||||||||||| ||||| |||||| | ||||| ||| |||||||||||    
T  18225 ctaaggtaagggtgagactatctctcaataatcataatctataatttttgaaaa 18172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0317 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0317
Description:

Target: scaffold0317; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 114
Target Start/End: Complemental strand, 1441 - 1389
Alignment:
Q  62 taaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaa 114  Q
    |||||||||||||||| |||||||||||  | || |||||| |||||||||||    
T  1441 taaggtaagggtgagactatctttcaatgatcatgatatataatttttgaaaa 1389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 90
Target Start/End: Original strand, 45259 - 45303
Alignment:
Q  46 tttgtctttgcaattctaaggtaagggtgagattatctttcaata 90  Q
    |||||||| |||| |||||||||||||||||| ||||| ||||||    
T  45259 tttgtcttcgcaaatctaaggtaagggtgagactatctctcaata 45303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 114
Target Start/End: Original strand, 40524 - 40584
Alignment:
Q  54 tgcaattctaaggtaagggtgagattatctttcaatagttataatatatgatttttgaaaa 114  Q
    ||||| |||||||||||||||||| ||||| |||||| | ||| ||||| |||| ||||||    
T  40524 tgcaaatctaaggtaagggtgagactatctctcaataatcatagtatataatttctgaaaa 40584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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