View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10671_low_67 (Length: 209)
Name: NF10671_low_67
Description: NF10671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10671_low_67 |
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Alignment Details
Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 64 - 145
Target Start/End: Complemental strand, 32996759 - 32996678
Alignment:
| Q |
64 |
cagaaaaagcttaacatcaactgttcttcttctcgcgtacaatactcagtttccaacaaagaacatcaactcttcttctctg |
145 |
Q |
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| T |
32996759 |
cagaaaaagcttaacatcaactgttcttcttctcgcgtaaaatactcagtttccaacaaagaacatcaactcttcttctctg |
32996678 |
T |
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Target: chr6 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 67 - 142
Target Start/End: Complemental strand, 24549714 - 24549639
Alignment:
| Q |
67 |
aaaaagcttaacatcaactgttcttcttctcgcgtacaatactcagtttccaacaaagaacatcaactcttcttct |
142 |
Q |
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||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |
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| T |
24549714 |
aaaaagcttaacatcaactattcttcttctcgcgtaccctactcagtttcgaacaaagaacatcaactcttcttct |
24549639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 67 - 142
Target Start/End: Complemental strand, 24741588 - 24741513
Alignment:
| Q |
67 |
aaaaagcttaacatcaactgttcttcttctcgcgtacaatactcagtttccaacaaagaacatcaactcttcttct |
142 |
Q |
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|||| |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
24741588 |
aaaaggcttaacatcaattgtacttcttctcgcgtacaatactcagtttccaacaaagaacatcaactattcttct |
24741513 |
T |
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