View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10671_low_9 (Length: 396)
Name: NF10671_low_9
Description: NF10671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10671_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 22 - 391
Target Start/End: Original strand, 14956160 - 14956529
Alignment:
| Q |
22 |
accaaccaacactaagtgttnnnnnnntgtcacccttattctattactctctcctttctctatccttcatcataaccatcaaaattttactcaaaatcac |
121 |
Q |
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| T |
14956160 |
accaaccaacactaagtgttaaaaaaatgtcatccttattctattactctctcctttctctatccttcatcataaccatcaaaattttactcaaaatcac |
14956259 |
T |
|
| Q |
122 |
atcaagaagactaaaaaaccttccaccaggtccaccaacaattcctataattggcaacctccaccacctaaaacaccctctccaccgtaccttcacaacc |
221 |
Q |
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| T |
14956260 |
atcaagaaggctaaaaaaccttccaccaggtccaccaacaattcctataattggcaacctccaccacctaaaacaccctctccaccgtaccttcacaacc |
14956359 |
T |
|
| Q |
222 |
ctatcacaaacatacggtgacatcttttcactttggttcggttcgcgcctagttgtcgttgtttcttccccatctttagcccatgaatgctttaccaaaa |
321 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||| |
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| T |
14956360 |
ctatcacaaacatacggtgacatcttttcactttggttcggttcgcgcctagttgtcgttgtttcttccccgtctttagcccatgaatgcttcacaaaaa |
14956459 |
T |
|
| Q |
322 |
acgacatcattttagcgaaccggccacggttcctaaccggaaaatacatcttttacaattacacaaccct |
391 |
Q |
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| T |
14956460 |
acgacatcattttagcgaaccgaccacgtttcctaaccggaaaatacatcttttacaattacacaaccct |
14956529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 163 - 326
Target Start/End: Complemental strand, 38976496 - 38976333
Alignment:
| Q |
163 |
ttcctataattggcaacctccaccacctaaaacaccctctccaccgtaccttcacaaccctatcacaaacatacggtgacatcttttcactttggttcgg |
262 |
Q |
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| T |
38976496 |
ttcccataattggcaaccttcaccacctcaaacgtcccctccaccacaccttcaaaggcctatctaaaaaatatggtgatgtcatttcactttggtttgg |
38976397 |
T |
|
| Q |
263 |
ttcgcgcctagttgtcgttgtttcttccccatctttagcccatgaatgctttaccaaaaacgac |
326 |
Q |
| |
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||| || || || || ||||| ||||| |||||||||| ||| ||||| ||||| ||||||||| |
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| T |
38976396 |
ttcacgtcttgtggttgttgtctcttcaccatctttagtccaagaatgttttacaaaaaacgac |
38976333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 116 - 348
Target Start/End: Complemental strand, 39587252 - 39587020
Alignment:
| Q |
116 |
aatcacatcaagaagactaaaaaaccttccaccaggtccaccaacaattcctataattggcaacctccaccacctaaaacaccctctccaccgtaccttc |
215 |
Q |
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||||||| |||||| ||| ||||||||||||||||||||| ||| ||||| || || |||||| | || || || |||||||| || |||||||||||| |
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| T |
39587252 |
aatcacaacaagaaaactcaaaaaccttccaccaggtccatcaagtattccaattataggcaacattcatcaactcaaacacccacttcaccgtaccttc |
39587153 |
T |
|
| Q |
216 |
acaaccctatcacaaacatacggtgacatcttttcactttggttcggttcgcgcctagttgtcgttgtttcttccccatctttagcccatgaatgcttta |
315 |
Q |
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|| || ||||||| ||||||| | ||||||| || |||||||||| || | || ||||||||||| || || ||| | | || ||||| || | |
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| T |
39587152 |
cacactctctcacaaaaatacggtcaagtcttttccctacggttcggttcacgttttgtcgtcgttgtttcatcaccttctgtcgtacacgaatgtttca |
39587053 |
T |
|
| Q |
316 |
ccaaaaacgacatcattttagcgaaccggccac |
348 |
Q |
| |
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| T |
39587052 |
caaaaaatgacactattttagcaaaccggccac |
39587020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 135 - 343
Target Start/End: Original strand, 5883891 - 5884099
Alignment:
| Q |
135 |
aaaaaccttccaccaggtccaccaacaattcctataattggcaacctccaccacctaaaacaccctctccaccgtaccttcacaaccctatcacaaacat |
234 |
Q |
| |
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||||||||||||||||| |||| | ||||||||||||| ||||| ||||| || ||||| || ||||||| || ||| ||| ||||||||| || |
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| T |
5883891 |
aaaaaccttccaccaggcccacaatgtcttcctataattggaaaccttcaccaactcaaacaaccactccaccacacattccacaccttatcacaaaaat |
5883990 |
T |
|
| Q |
235 |
acggtgacatcttttcactttggttcggttcgcgcctagttgtcgttgtttcttccccatctttagcccatgaatgctttaccaaaaacgacatcatttt |
334 |
Q |
| |
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| || | |||||||| |||||||||||||| || || || || |||||||| || | | |||| || ||||| ||||||||||||||||| |||| |
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| T |
5883991 |
atggccaaatcttttctctttggttcggttctcgtctcgtcgttgttgtttcatcgttaacaatagcacaagaatgttttaccaaaaacgacatagtttt |
5884090 |
T |
|
| Q |
335 |
agcgaaccg |
343 |
Q |
| |
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||||||||| |
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| T |
5884091 |
agcgaaccg |
5884099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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