View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10672_1 (Length: 537)

Name: NF10672_1
Description: NF10672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10672_1
NF10672_1
[»] chr8 (2 HSPs)
chr8 (28-528)||(18318091-18318593)
chr8 (196-239)||(32152209-32152252)
[»] chr3 (1 HSPs)
chr3 (191-260)||(513426-513495)
[»] chr1 (2 HSPs)
chr1 (191-258)||(33161431-33161498)
chr1 (189-239)||(15837976-15838026)
[»] chr7 (3 HSPs)
chr7 (192-258)||(10168806-10168872)
chr7 (192-258)||(10176331-10176397)
chr7 (205-261)||(15091346-15091402)
[»] chr4 (5 HSPs)
chr4 (191-253)||(6007663-6007725)
chr4 (190-247)||(1547461-1547518)
chr4 (189-254)||(2460593-2460658)
chr4 (186-258)||(548246-548318)
chr4 (193-257)||(566623-566687)
[»] chr5 (3 HSPs)
chr5 (196-258)||(41900250-41900312)
chr5 (191-251)||(17205954-17206014)
chr5 (309-337)||(17206980-17207008)
[»] chr6 (1 HSPs)
chr6 (191-239)||(28935571-28935619)


Alignment Details
Target: chr8 (Bit Score: 452; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 28 - 528
Target Start/End: Complemental strand, 18318593 - 18318091
Alignment:
Q  28 ttcaacgggagagtagagatttggcagagaagcatattgaggttaactttgaagtggtatgtgaggtgaagagagtggaagttggagaatctatctaaga 127  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  18318593 ttcaacgggagagtagagatttggcagagaagcatatttaggttaactttgaagtggtatgtgaggtgaagagagtggaggttggagaatctatctaaga 18318494  T
Q  128 ggcttgatagagaaggaatgaaacggatatttatttgatggaaccatgtgactttgctgactttgagtgagaatcggagactgttggtgatggtgagaaa 227  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  18318493 ggcttgatagagaaggaacgaaacggatatttatttaatggaaccatgcaactttgctgactttgagtgagaatcggagactgttggtgacggtgagaaa 18318394  T
Q  228 ctgtttagagacaacggatagagatttcaagcaattacggttgtagtagtactcgtcttccccgtcgtagtcattgaggaggaatttgaagatagatttc 327  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18318393 ctgtttagagacaacggatagagatttcaagcaattacggttgtagtagtactcgtcttccccgtcgtagtcattgaggaggaatttgaagatagatttc 18318294  T
Q  328 caacattcattgggtagataaatttcagcttctagagttgcacccattcctg--ttgtggaagaagttagaaattgtttgatagtgtattagtttaattg 425  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| ||||| |||    
T  18318293 caacattcattgggtagataaatttcagcttctagagttgcacccattcctgttttgtggaagaagttagaaattgtttgatagtgtatttgtttatttg 18318194  T
Q  426 ccgttgatggatgatgagtcgtcctgcgatttgtgaagaaggtaaggtagccacaaatttgatttgcgttaagttgagagggtttggttgagttcagtat 525  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  18318193 ccgttgatggatgatgagtcgtcctgcgatttgtgaagaaggtaaggtagccacaaatttgatttgagttaagttgagagggtttggttgagttcagtat 18318094  T
Q  526 aat 528  Q
    |||    
T  18318093 aat 18318091  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 196 - 239
Target Start/End: Original strand, 32152209 - 32152252
Alignment:
Q  196 gagaatcggagactgttggtgatggtgagaaactgtttagagac 239  Q
    ||||||||||||||||||||||||| ||| |||||||| |||||    
T  32152209 gagaatcggagactgttggtgatggagaggaactgtttggagac 32152252  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 191 - 260
Target Start/End: Complemental strand, 513495 - 513426
Alignment:
Q  191 tgagtgagaatcggagactgttggtgatggtgagaaactgtttagagacaacggatagagatttcaagca 260  Q
    |||| |||||||||||| |||||||||||| ||| |||||||| |||||  |||| ||||||||||||||    
T  513495 tgagagagaatcggagattgttggtgatggagagtaactgttttgagacggcggagagagatttcaagca 513426  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 191 - 258
Target Start/End: Original strand, 33161431 - 33161498
Alignment:
Q  191 tgagtgagaatcggagactgttggtgatggtgagaaactgtttagagacaacggatagagatttcaag 258  Q
    ||||||||||||| ||||| || ||||||| |||||||||||| ||||| | ||||||||| ||||||    
T  33161431 tgagtgagaatcgaagactattagtgatggagagaaactgtttggagacgagggatagagaattcaag 33161498  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 189 - 239
Target Start/End: Complemental strand, 15838026 - 15837976
Alignment:
Q  189 tttgagtgagaatcggagactgttggtgatggtgagaaactgtttagagac 239  Q
    |||||| ||||||||||||| ||||||||||| |||||||||||| |||||    
T  15838026 tttgagggagaatcggagacggttggtgatggagagaaactgtttggagac 15837976  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 258
Target Start/End: Complemental strand, 10168872 - 10168806
Alignment:
Q  192 gagtgagaatcggagactgttggtgatggtgagaaactgtttagagacaacggatagagatttcaag 258  Q
    |||||| ||||| ||| |||||||||||| ||| |||||||| ||||||| ||||||||| ||||||    
T  10168872 gagtgataatcgaagagtgttggtgatggagaggaactgtttggagacaagggatagagaattcaag 10168806  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 258
Target Start/End: Complemental strand, 10176397 - 10176331
Alignment:
Q  192 gagtgagaatcggagactgttggtgatggtgagaaactgtttagagacaacggatagagatttcaag 258  Q
    |||||| ||||| ||| |||||||||||| ||| |||||||| ||||||| ||||||||| ||||||    
T  10176397 gagtgataatcgaagagtgttggtgatggagaggaactgtttggagacaagggatagagaattcaag 10176331  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 205 - 261
Target Start/End: Complemental strand, 15091402 - 15091346
Alignment:
Q  205 agactgttggtgatggtgagaaactgtttagagacaacggatagagatttcaagcaa 261  Q
    |||||||||||||||| ||| |||||||| ||||| | ||| ||||| |||||||||    
T  15091402 agactgttggtgatggagaggaactgtttggagacgagggagagagaattcaagcaa 15091346  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 191 - 253
Target Start/End: Original strand, 6007663 - 6007725
Alignment:
Q  191 tgagtgagaatcggagactgttggtgatggtgagaaactgtttagagacaacggatagagatt 253  Q
    |||| ||||||||||||||||||||||||| ||| |||||||| ||||| | ||| |||||||    
T  6007663 tgagagagaatcggagactgttggtgatggagaggaactgtttcgagacgagggagagagatt 6007725  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 247
Target Start/End: Complemental strand, 1547518 - 1547461
Alignment:
Q  190 ttgagtgagaatcggagactgttggtgatggtgagaaactgtttagagacaacggata 247  Q
    ||||| ||||||||||||| ||||||||||| ||| || ||||| ||||||| |||||    
T  1547518 ttgagagagaatcggagacggttggtgatggagaggaattgtttggagacaagggata 1547461  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 189 - 254
Target Start/End: Original strand, 2460593 - 2460658
Alignment:
Q  189 tttgagtgagaatcggagactgttggtgatggtgagaaactgtttagagacaacggatagagattt 254  Q
    |||||| |||||||||||||  |||||||||| ||| |||||||| ||||| | ||| ||||||||    
T  2460593 tttgagagagaatcggagacgattggtgatggagaggaactgtttggagaccatggagagagattt 2460658  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 186 - 258
Target Start/End: Original strand, 548246 - 548318
Alignment:
Q  186 gactttgagtgagaatcggagactgttggtgatggtgagaaactgtttagagacaacggatagagatttcaag 258  Q
    |||| ||||||||| | | ||| | |||||||||| |||||||||||| |||||||| || ||||| ||||||    
T  548246 gactgtgagtgagagtggaagattattggtgatggagagaaactgttttgagacaacagagagagacttcaag 548318  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 193 - 257
Target Start/End: Original strand, 566623 - 566687
Alignment:
Q  193 agtgagaatcggagactgttggtgatggtgagaaactgtttagagacaacggatagagatttcaa 257  Q
    ||||| ||||| ||||||| |||||||| |||||||||||| ||||| | ||| ||||| |||||    
T  566623 agtgaaaatcgaagactgtcggtgatggagagaaactgtttggagactaaggagagagaattcaa 566687  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 196 - 258
Target Start/End: Complemental strand, 41900312 - 41900250
Alignment:
Q  196 gagaatcggagactgttggtgatggtgagaaactgtttagagacaacggatagagatttcaag 258  Q
    |||||||| ||| |||||||||||| |||||||||||| ||||| |  || ||||||||||||    
T  41900312 gagaatcgaagagtgttggtgatggagagaaactgtttggagacgagtgagagagatttcaag 41900250  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 191 - 251
Target Start/End: Original strand, 17205954 - 17206014
Alignment:
Q  191 tgagtgagaatcggagactgttggtgatggtgagaaactgtttagagacaacggatagaga 251  Q
    ||||||||||||||| ||||| |||||| | ||| |||||||| ||||| | |||||||||    
T  17205954 tgagtgagaatcggaaactgtcggtgatagagagtaactgtttggagacgagggatagaga 17206014  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 309 - 337
Target Start/End: Complemental strand, 17207008 - 17206980
Alignment:
Q  309 gaatttgaagatagatttccaacattcat 337  Q
    |||||||||||||||||||||||||||||    
T  17207008 gaatttgaagatagatttccaacattcat 17206980  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 191 - 239
Target Start/End: Original strand, 28935571 - 28935619
Alignment:
Q  191 tgagtgagaatcggagactgttggtgatggtgagaaactgtttagagac 239  Q
    |||||| ||||||||||||||||||||| | ||| |||||||| |||||    
T  28935571 tgagtgtgaatcggagactgttggtgatagagaggaactgtttcgagac 28935619  T

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