View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10672_2 (Length: 536)
Name: NF10672_2
Description: NF10672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10672_2 |
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Alignment Details
Target: chr8 (Bit Score: 481; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 15 - 507
Target Start/End: Original strand, 14039306 - 14039798
Alignment:
| Q |
15 |
catcatcataagcgtagctataagcgcgaggacaagcactcttgaaaaactgtgagtatgaacttggcttgcatgtatttggagaagcgtaagcgccact |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14039306 |
catcatcataagcgtagctataagcgcgaggacaagcactcttgaaaaactgtgagtatgaacttggcttgcatgtatttggagaagcgtaagcgccact |
14039405 |
T |
|
| Q |
115 |
acaacaatattgtggatccccaaacgcttcacacgcgcttttacacgctacacctccgccattactcatcactttcaactcggttggacatgccgcgttc |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14039406 |
acaacaatattgtggatccccaaacgcttcacacgcgcttttacacgctacacctccgccattactcatcactttcaactcggttggacatgccgcgttc |
14039505 |
T |
|
| Q |
215 |
aaatccaccatgcaacctgttgtcatgcagtttccgcctccggttgctccttgtggttcgatcatcattgggaggttgtaaccgtccacgagactaacgt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14039506 |
aaatccaccatgcaacctgttgtcatgcagtttccgcctccggttgctccttgtggttcgatcatcattgggaggttgtaaccgtccacgagactaacgt |
14039605 |
T |
|
| Q |
315 |
cgaagaaatcaagtccgtttgcaccattaagtgtaaactcggctaatgtagctggcggttgagcgtttcctccattacattctatggacgaggaagcaca |
414 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14039606 |
cgaagaaatcaagtccgtttgcaccgttaagtgtaaactcggctaatgtagctggcggttgagcgtttcctccattacattctatggacgaggaagcaca |
14039705 |
T |
|
| Q |
415 |
gtcagcggtaacacaggagaattttccggtggaatcttgagagcagagggtacgtccccatagacggcctgaccacttggggggtacggctag |
507 |
Q |
| |
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|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14039706 |
gtcaccggtaacacatgagaattttccggtggaatcttgagagcagagggtacgtccccatagacggcctgaccacttggggggtacggctag |
14039798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 15 - 504
Target Start/End: Original strand, 18954277 - 18954766
Alignment:
| Q |
15 |
catcatcataagcgtagctataagcgcgaggacaagcactcttgaaaaactgtgagtatgaacttggcttgcatgtatttggagaagcgtaagcgccact |
114 |
Q |
| |
|
||||||||||||| || |||||||| || ||||| |||||||| || || |||||||| ||||||||||||||||||| ||||| ||||||||||||| | |
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| T |
18954277 |
catcatcataagcataactataagcacgtggacatgcactcttaaagaattgtgagtacgaacttggcttgcatgtatctggagtagcgtaagcgccatt |
18954376 |
T |
|
| Q |
115 |
acaacaatattgtggatccccaaacgcttcacacgcgcttttacacgctacacctccgccattactcatcactttcaactcggttggacatgccgcgttc |
214 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||| |||| |||| |
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|
| T |
18954377 |
acaacaatattgcagatctccaaacgcttcacacgcgcttttacacgctacactgcttccgttactcatcactttcaactcggttggacacgccgtgttc |
18954476 |
T |
|
| Q |
215 |
aaatccaccatgcaacctgttgtcatgcagtttccgcctccggttgctccttgtggttcgatcatcattgggaggttgtaaccgtccacgagactaacgt |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || ||||||||||| |||||| ||||| || ||||||||||||||||| ||||||||||||| |
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|
| T |
18954477 |
aaatccaccatgcaacctgttgtcatgcagtttccacccccggttgctccacgtggtttgatcaacaacgggaggttgtaaccgtcaacgagactaacgt |
18954576 |
T |
|
| Q |
315 |
cgaagaaatcaagtccgtttgcaccattaagtgtaaactcggctaatgtagctggcggttgagcgtttcctccattacattctatggacgaggaagcaca |
414 |
Q |
| |
|
|||||||||||||||| ||| || |||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||| |
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|
| T |
18954577 |
cgaagaaatcaagtccacctgcgccgttaagtgtaaactctgctaatgttgctggcggttgagcgtttcctccaacacattctatggtggaggaagcaca |
18954676 |
T |
|
| Q |
415 |
gtcagcggtaacacaggagaattttccggtggaatcttgagagcagagggtacgtccccatagacggcctgaccacttggggggtacggc |
504 |
Q |
| |
|
||| | |||||||| ||||||||||||||||||||||||||||| ||||| || |||||||||||||| |||||||||||||||||||| |
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|
| T |
18954677 |
gtcgccagtaacacatgagaattttccggtggaatcttgagagcatagggttcggccccatagacggccggaccacttggggggtacggc |
18954766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 15 - 159
Target Start/End: Original strand, 31945019 - 31945163
Alignment:
| Q |
15 |
catcatcataagcgtagctataagcgcgaggacaagcactcttgaaaaactgtgagtatgaacttggcttgcatgtatttggagaagcgtaagcgccact |
114 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||| || |||||||| ||||| ||||||||||||||||| || || | |||| | ||||||||| | |
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|
| T |
31945019 |
catcatcataagcatagctataagcgcgtggacacgcgctcttgaagaactgcgagtatgaacttggcttacaagtctgcggagttccataagcgccatt |
31945118 |
T |
|
| Q |
115 |
acaacaatattgtggatccccaaacgcttcacacgcgcttttaca |
159 |
Q |
| |
|
|||||||| |||||| ||||| ||||| |||||||||||||| |
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|
| T |
31945119 |
gcaacaatacaatggatcaccaaaggcttcgcacgcgcttttaca |
31945163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 15 - 489
Target Start/End: Complemental strand, 8798324 - 8797838
Alignment:
| Q |
15 |
catcatcataagcgtagctataagcgcgaggacaagcactcttgaaaaactgtgagtatgaacttggcttgcatgtatttggagaagcgtaagcgccact |
114 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||| |||||||| |||||||| ||||| |||||||| || || |||| || ||| | ||||||||||| |
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|
| T |
8798324 |
catcatcataagcgtaactataagcgcgtggacacgcactcttaaaaaactgcgagtaggaacttggtttacacgtatccggggaaccataagcgccact |
8798225 |
T |
|
| Q |
115 |
acaacaatattgtggatccccaaacgcttcacacgcgcttttacacgctacac------ctccgcc------attactcatcactttcaactcggttgga |
202 |
Q |
| |
|
|| |||||||| ||||||||||||||||||||||||||||||||||| || | | ||||| | |||| |||||||||||||| | ||| |
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|
| T |
8798224 |
gcagcaatattgcggatccccaaacgcttcacacgcgcttttacacgccacgctctcttcaccgccgttattactacttatcactttcaactccatcgga |
8798125 |
T |
|
| Q |
203 |
catgccgcgttcaaatccaccatgcaacctgttgtcatgcagtttccgcctccggttgctccttgtggttcgatcatcattgggaggttgtaaccgtcca |
302 |
Q |
| |
|
|| |||||||| || || || |||||| |||| | ||||||||||||| |||||| | || ||||||||||| | |||||||| ||||||||||| | |
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|
| T |
8798124 |
cacgccgcgtttaagtcgacggagcaacccgttgccgtgcagtttccgccgccggtttcaccgtgtggttcgattaatattgggagattgtaaccgtcga |
8798025 |
T |
|
| Q |
303 |
cgagactaacgtcgaagaaatcaagtccgtttgcaccattaagtgtaaactcggctaatgtagctggcggttgagcgtttcctccattacattctatgga |
402 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||| || ||||| || || |||||||| || || ||| |||||||| ||| |||||| |||| |
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|
| T |
8798024 |
cgagactaacgtcgaagaaatcaagtcctccggaaccgttgagtgtgaattctgctaatgttgccggtggtatagcgtttcttccggcacattcgatggt |
8797925 |
T |
|
| Q |
403 |
cgaggaagcacagtcagcggtaacacaggagaattttccggtggaatcttgagagcagagggtacgtccccatagacggcctgacca |
489 |
Q |
| |
|
|||||| ||||||| |||| | || ||||||||||| |||| ||||| |||||||| || |||||||||| |||||| ||||| |
|
|
| T |
8797924 |
ggaggaatcacagtcgccggtgatgcatgagaattttccagtggggtcttgggagcagagtgttcgtccccatacacggccggacca |
8797838 |
T |
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