View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10672_4 (Length: 506)
Name: NF10672_4
Description: NF10672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10672_4 |
 | |
|
| [»] scaffold0691 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 22)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 5 - 497
Target Start/End: Complemental strand, 2856094 - 2855599
Alignment:
| Q |
5 |
tgtcacttcgtggaattaaggaaagaagtgagaggtataactttcaaatttcacatgaacgaggatcatcaagc---agctatagtactagagagacaga |
101 |
Q |
| |
|
||||| |||||||||| ||||||||||| ||||||||||||||||||||||||| || | |||||| |||||| || | | | | |||||||||| |
|
|
| T |
2856094 |
tgtcaattcgtggaatcaaggaaagaagccagaggtataactttcaaatttcacacgagcaaggatcctcaagccaaagaaaccgcagtggagagacaga |
2855995 |
T |
|
| Q |
102 |
aaaaggaagatggcgtgatcatcgactgtcttcccttttcattgaagaaacagaaattgtaggaattgaaggccaaacagaacaattgtctggttggcta |
201 |
Q |
| |
|
||| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||| || |||| |||||||||||||| || |
|
|
| T |
2855994 |
aaatggaagatggcgtgatcctcgactgtcttcccttttcattgaagaaacagaagttgtaggcattgaaggcccaaaagaagaattgtctggttggtta |
2855895 |
T |
|
| Q |
202 |
ttggatggtgcagctgagcgcgcagtgatttcagtggtaggaatgggaggtctaggaaaaactactcttgccaagctagtttttgacagccaaaaggtaa |
301 |
Q |
| |
|
||||| ||| | |||||||| ||||||||||||||| |||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
2855894 |
ttggaaggtatatctgagcgcaaagtgatttcagtggtgggaatggggggtataggaaaaactactcttgccaagctaatttttgacagccaaaaggtaa |
2855795 |
T |
|
| Q |
302 |
cggcaaactttgattgtcgtgcttgcgtcacagtttctcaatcatacactgtgagaggtttgttgataaacatgatggagcaattttatcggggaactga |
401 |
Q |
| |
|
| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
2855794 |
caacaaactttgattgtcgtgcttgcatcacagtttctcaatcatacactgtgagaggtttgttgataaacatgatggagcaattttgtcggggaactga |
2855695 |
T |
|
| Q |
402 |
agaccctcttccacagatgttacacaaaatggatgacaagtcattgattatagaagtgaggcaatacctggaacataagaggtatttgatattctt |
497 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||||| ||||| |||||||| |||| |||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
2855694 |
agaccctcttccactgatgttgcacaaaatggatgaccagtcactgattatacaagtaaggcaatacctgcaacataagaggtatttggtattctt |
2855599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 497
Target Start/End: Original strand, 2807120 - 2807616
Alignment:
| Q |
1 |
aaggtgtcacttcgtggaattaaggaaagaagtgagaggtataactttcaaatttcacatgaacgaggatcatcaagcagctatagtactagagagacag |
100 |
Q |
| |
|
|||||||| |||| ||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| || | || ||||||||||||| |
|
|
| T |
2807120 |
aaggtgtcggttcgcggaatcaaggaaagaagtgagaggtataacttacaaatttcacatgaacaaggatcatcaagccgcaacagcactagagagacag |
2807219 |
T |
|
| Q |
101 |
aaaaaggaagatggcgtgatcatcgactgtcttcccttttcattgaagaaacagaaattgtaggaattgaaggccaaacagaacaattgtctggttggct |
200 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||| ||||| || || |||| || |||||| |||| | |
|
|
| T |
2807220 |
aaaatggaagatggcgtgatcctcgactgtcttccctttttattgaagaaagagaaattgtaggatttgaattcccaagagaagaaatgtctgtttggtt |
2807319 |
T |
|
| Q |
201 |
attggatggtgcagctgagcgcgcagtgatttcagtggtaggaatgggaggtctaggaaaaactactcttgccaagctagtttttgacagccaaaaggta |
300 |
Q |
| |
|
|||||| |||| |||||||||| | |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
2807320 |
attggagggtgtagctgagcgcacggtgatttcggtggtaggaatgggaggtctaggaaaaaccactcttgccaagctagtttttgatagccaaacggta |
2807419 |
T |
|
| Q |
301 |
acggcaaactttgattgtcgtgcttgcgtcacagtttctcaatcatacactgtgagaggtttgttgataaacatgatggagcaattttatcggggaactg |
400 |
Q |
| |
|
|| || |||||||||||||||||||| || |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| || || ||||| |
|
|
| T |
2807420 |
acaacacactttgattgtcgtgcttgcatcgcagtttctcaatcatacactgtgagagggttgatgataaacatgatggagcaattttgtcaggaaactg |
2807519 |
T |
|
| Q |
401 |
aagaccctcttccacagatgttacacaaaatggatgacaagtcattgattatagaagtgaggcaatacctggaacataagaggtatttgatattctt |
497 |
Q |
| |
|
|||||||||||||| | | ||||| |||| |||||||||| ||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
2807520 |
aagaccctcttccaaataagttacgcaaattggatgacaaatcactgattgtagaagtgaggcaatacctgcaacataagaggtatttgatattctt |
2807616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 16 - 497
Target Start/End: Complemental strand, 2838876 - 2838389
Alignment:
| Q |
16 |
ggaattaaggaaagaagtgagaggtataactttcaaatttcacatgaacgaggatcatcaagcagctata------gtactagagagacagaaaaaggaa |
109 |
Q |
| |
|
||||| ||| ||||||| |||||||||||||||||||||||| |||||| |||||| ||||||||| | || || ||||| ||||||| |||| |
|
|
| T |
2838876 |
ggaatcaagaaaagaagcgagaggtataactttcaaatttcaaatgaacaaggatcctcaagcagcagcaacagcagtcctggagaggcagaaaatggaa |
2838777 |
T |
|
| Q |
110 |
gatggcgtgatcatcgactgtcttcccttttcattgaagaaacagaaattgtaggaattgaaggccaaacagaacaattgtctggttggctattggatgg |
209 |
Q |
| |
|
|||||| || | ||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||| || | | ||||||| ||||||| || |
|
|
| T |
2838776 |
gatggcacgaccctcgactgtcttcccttttcattgaagaaacagaaattgtaggatttgaaggcccaagagaagaaatatatggttggttattggaggg |
2838677 |
T |
|
| Q |
210 |
tgcagctgagcgcgcagtgatttcagtggtaggaatgggaggtctaggaaaaactactcttgccaagctagtttttgacagccaaaaggtaacggcaaac |
309 |
Q |
| |
|
||||||||||||| |||| || ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
2838676 |
tgcagctgagcgcacagtcatatcagtggtaggaatggggggtctaggaaaaaccactcttgccaagctagtttttgaaagccaaaaggtaacagcaaac |
2838577 |
T |
|
| Q |
310 |
tttgattgtcgtgcttgcgtcacagtttctcaatcatacactgtgagaggtttgttgataaacatgatggagcaattttatcggggaactgaagaccctc |
409 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
2838576 |
tttgattgttatgcttgcgtcacagtttctcaatcatacactgtgagaggtttgttgataaacatgatggagcaattttgtcggggaactgaagaccctc |
2838477 |
T |
|
| Q |
410 |
ttccacagatgttacacaaaatggatgacaagtcattgattatagaagtgaggcaatacctggaacataagaggtatttgatattctt |
497 |
Q |
| |
|
||||||||||||| ||||||| ||||||| ||||| ||||| |||||||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
2838476 |
ttccacagatgttgcacaaaaaggatgaccagtcactgattgaagaagtgaggcaatacctccaacataagaggtacttgatattctt |
2838389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 11 - 497
Target Start/End: Original strand, 2748858 - 2749344
Alignment:
| Q |
11 |
ttcgtggaattaaggaaagaagtgagaggtataactttcaaatttcacatgaacgaggatcatcaagcagctatagtactagagagacagaaaaaggaag |
110 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||| | ||||||||| ||| | |||||| |||||| |||| |
|
|
| T |
2748858 |
ttcgtggaatcaaggaaagaagtgagaggtataactttcaaatttcacacgaacaaggaacttcaagcagcattagcataggagagagagaaaatggaaa |
2748957 |
T |
|
| Q |
111 |
atggcgtgatcatcgactgtcttcccttttcattgaagaaacagaaattgtaggaattgaaggccaaacagaacaattgtctggttggctattggatggt |
210 |
Q |
| |
|
||||| ||||| |||||||||||| ||||| ||||||||||||||| |||| || ||||||| || || |||| || ||||||||||| ||||||||||| |
|
|
| T |
2748958 |
atggcatgatcctcgactgtcttctctttttattgaagaaacagaagttgttggtattgaagtcccaaaagaagaactgtctggttggttattggatggt |
2749057 |
T |
|
| Q |
211 |
gcagctgagcgcgcagtgatttcagtggtaggaatgggaggtctaggaaaaactactcttgccaagctagtttttgacagccaaaaggtaacggcaaact |
310 |
Q |
| |
|
| |||||||||| | ||||| || ||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||| |||||||| | ||| ||| |
|
|
| T |
2749058 |
gaagctgagcgcacggtgatatccgtggtaggaatgggaggcctaggaaaaaccactcttgccaagctagtttttgaaagcaaaaaggtatcagcacact |
2749157 |
T |
|
| Q |
311 |
ttgattgtcgtgcttgcgtcacagtttctcaatcatacactgtgagaggtttgttgataaacatgatggagcaattttatcggggaactgaagaccctct |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||| | ||| ||||| |||| |
|
|
| T |
2749158 |
ttgattgtcgtgcttgcgtcacagtttctcaatcttacactgtgagaggtttgttgataaacatgatggagcaattctgtcggagtactaaagactctct |
2749257 |
T |
|
| Q |
411 |
tccacagatgttacacaaaatggatgacaagtcattgattatagaagtgaggcaatacctggaacataagaggtatttgatattctt |
497 |
Q |
| |
|
|| |||||||||||||||||||||||| ||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
2749258 |
tctgcagatgttacacaaaatggatgaccagtcactaattatagaagtgaggcaatacctgcaacataagaggtatttgatattctt |
2749344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 5 - 497
Target Start/End: Original strand, 5412761 - 5413235
Alignment:
| Q |
5 |
tgtcacttcgtggaattaaggaaagaagtgagaggtataactttcaaatttcacatgaacgaggatcatcaagcagctatagtactagagagacagaaaa |
104 |
Q |
| |
|
||||| |||||||||| |||||||||||||||||||||||||||||||||||| |||||| | || | ||||||||||||||| |
|
|
| T |
5412761 |
tgtcaattcgtggaatcaaggaaagaagtgagaggtataactttcaaatttca------------------agcagcaacagcagtagagagacagaaaa |
5412842 |
T |
|
| Q |
105 |
aggaagatggcgtgatcatcgactgtcttcccttttcattgaagaaacagaaattgtaggaattgaaggccaaacagaacaattgtctggttggctattg |
204 |
Q |
| |
|
||||||||||| |||| ||||||||||||||| |||||| |||||||||| |||||||||||||||| | || |||| |||||||||||||| ||||| |
|
|
| T |
5412843 |
tggaagatggcgagatcctcgactgtcttccctattcattacagaaacagaagttgtaggaattgaaggtccaaaagaagaattgtctggttggttattg |
5412942 |
T |
|
| Q |
205 |
gatggtgcagctgagcgcgcagtgatttcagtggtaggaatgggaggtctaggaaaaactactcttgccaagctagtttttgacagccaaaaggtaacgg |
304 |
Q |
| |
|
||||||||||| || || |||| || ||||||||||||||||| || ||||||||||| ||||||||||||||||||||||| |||||||||||| | | |
|
|
| T |
5412943 |
gatggtgcagcggaacgtacagtcatatcagtggtaggaatggggggcctaggaaaaaccactcttgccaagctagtttttgaaagccaaaaggtatcag |
5413042 |
T |
|
| Q |
305 |
caaactttgattgtcgtgcttgcgtcacagtttctcaatcatacactgtgagaggtttgttgataaacatgatggagcaattttatcggggaactgaaga |
404 |
Q |
| |
|
|| ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
5413043 |
cacactttgattgttgtgcttgcgtaacagtttctcaatcatacactgtgagaggtttgttgataaacatgatggagcaattttgtcggggaactgaaga |
5413142 |
T |
|
| Q |
405 |
ccctcttccacagatgttacacaaaatggatgacaagtcattgattatagaagtgaggcaatacctggaacataagaggtatttgatattctt |
497 |
Q |
| |
|
| ||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
5413143 |
ctctcttccgcagatgttacacaaaatggatgaccggtcactgattatagaagtgaggcaatacctgcaacataagaggtatttgatattctt |
5413235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 5 - 497
Target Start/End: Original strand, 2768923 - 2769418
Alignment:
| Q |
5 |
tgtcacttcgtggaattaaggaaagaagtgagaggtataactttcaaatttcacatgaacgaggatcatcaagcagct---atagtactagagagacaga |
101 |
Q |
| |
|
||||| |||||||||| ||||||||||| |||||||||| |||||||| ||||||||||| |||||| |||| |||| | |||| | ||||| |||| |
|
|
| T |
2768923 |
tgtcaattcgtggaatcaaggaaagaagcgagaggtatagctttcaaacttcacatgaacaaggatcctcaaacagcaggaacagtagtggagagtcaga |
2769022 |
T |
|
| Q |
102 |
aaaaggaagatggcgtgatcatcgactgtcttcccttttcattgaagaaacagaaattgtaggaattgaaggccaaacagaacaattgtctggttggcta |
201 |
Q |
| |
|
|| |||||||||||||||| ||| |||||||||| || |||||||||||||||||||||||| | ||||||| || |||| |||| | ||||||| || |
|
|
| T |
2769023 |
aagtggaagatggcgtgatcctcggatgtcttccctctttattgaagaaacagaaattgtaggattggaaggcccaagagaagaattatttggttggtta |
2769122 |
T |
|
| Q |
202 |
ttggatggtgcagctgagcgcgcagtgatttcagtggtaggaatgggaggtctaggaaaaactactcttgccaagctagtttttgacagccaaaaggtaa |
301 |
Q |
| |
|
||||| ||||||||| ||||| ||||||| ||||||||||||||||| |||||||||||||| ||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
2769123 |
ttggagggtgcagctaagcgcacagtgatatcagtggtaggaatggggggtctaggaaaaaccactcttgccaaactagtttatgacagccaaaaggtaa |
2769222 |
T |
|
| Q |
302 |
cggcaaactttgattgtcgtgcttgcgtcacagtttctcaatcatacactgtgagaggtttgttgataaacatgatggagcaattttatcggggaactga |
401 |
Q |
| |
|
| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||| || || |||||| |
|
|
| T |
2769223 |
ctgcaaactttgattgtcgtgcttgcatcacagtttctcaatcatacactgtgagagggttactgataaaaatgatggagcaattttgtcaggaaactga |
2769322 |
T |
|
| Q |
402 |
agaccctcttccacagatgttacacaaaatggatgacaagtcattgattatagaagtgaggcaatacctggaacataagaggtatttgatattctt |
497 |
Q |
| |
|
||| ||||| | | |||||||||||||||||||||||| |||| || | ||||| || ||| ||||||| ||||||||||||||||||||||||| |
|
|
| T |
2769323 |
agaacctctgctaaagatgttacacaaaatggatgacatgtcactggtaatagaggtaaggaaatacctacaacataagaggtatttgatattctt |
2769418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 16 - 497
Target Start/End: Original strand, 2759079 - 2759563
Alignment:
| Q |
16 |
ggaattaaggaaagaagtgagaggtataactttcaaatttcacatgaacgaggatcatcaa---gcagctatagtactagagagacagaaaaaggaagat |
112 |
Q |
| |
|
||||| ||||||||||| | |||||||||||||||||||||| |||||| |||||| |||| ||||| | | ||| ||||| |||||| ||||||| |
|
|
| T |
2759079 |
ggaatcaaggaaagaagcgtgaggtataactttcaaatttcaaatgaacaaggatcctcaaacagcagcaacactaccgaagagaaagaaaatggaagat |
2759178 |
T |
|
| Q |
113 |
ggcgtgatcatcgactgtcttcccttttcattgaagaaacagaaattgtaggaattgaaggccaaacagaacaattgtctggttggctattggatggtgc |
212 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||| || | | ||||||| ||||||| ||| | |
|
|
| T |
2759179 |
ggcgtgatcctcgactgtcttcccttttcattgaagaaacagaaattgtaggatttgaaggcccaaaagaagaactatatggttggttattggagggttc |
2759278 |
T |
|
| Q |
213 |
agctgagcgcgcagtgatttcagtggtaggaatgggaggtctaggaaaaactactcttgccaagctagtttttgacagccaaaaggtaacggcaaacttt |
312 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||||| ||||| || ||||| |||||||||||||||||||||||||||||||||||||| || | ||| |
|
|
| T |
2759279 |
agctgaacgcacagtgatttcagtggtaggaatggggggtctcggcaaaaccactcttgccaagctagtttttgacagccaaaaggtaacaacacagttt |
2759378 |
T |
|
| Q |
313 |
gattgtcgtgcttgcgtcacagtttctcaatcatacactgtgagaggtttgttgataaacatgatggagcaattttatcggggaactgaagaccctcttc |
412 |
Q |
| |
|
||||||| |||||| || ||||||||||||||||||||||||||| || ||||||| ||||||| |||||||| || || ||||||||||||||||| |
|
|
| T |
2759379 |
gattgtcaagcttgcatcgtagtttctcaatcatacactgtgagaggattactgataaaaatgatggcgcaattttgtcaggaaactgaagaccctcttc |
2759478 |
T |
|
| Q |
413 |
cacagatgttacacaaaatggatgacaagtcattgattatagaagtgaggcaatacctggaacataagaggtatttgatattctt |
497 |
Q |
| |
|
|| ||| |||||||||||||||||||| |||| |||||| ||| || ||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
2759479 |
caaagaagttacacaaaatggatgacaggtcactgattacagaggtaaggaaatacctagaacataagaggtatttgatattctt |
2759563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 11 - 497
Target Start/End: Original strand, 2797221 - 2797710
Alignment:
| Q |
11 |
ttcgtggaattaaggaaagaagtgagaggtataactttcaaatttcacatgaacgaggatcatcaagcagctata---gtactagagagacagaaaaagg |
107 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||||| | | | | ||||||||| || || | |
|
|
| T |
2797221 |
ttcgtggaatcaaggaaagaagtgagaggtataactttcaaatttcacagacaccaggatcatcaagcagcaacaacagcagtagagagacggataatag |
2797320 |
T |
|
| Q |
108 |
aagatggcgtgatcatcgactgtcttcccttttcattgaagaaacagaaattgtaggaattgaaggccaaacagaacaattgtctggttggctattggat |
207 |
Q |
| |
|
||||||| |||||| |||||||||||||||||| ||||||||||| | |||||| ||| ||||||||| | ||| |||||||||||||| || | || |
|
|
| T |
2797321 |
aagatggtgtgatcctcgactgtcttccctttttattgaagaaactgcaattgtcggatttgaaggcccgagggaagaattgtctggttggttactagag |
2797420 |
T |
|
| Q |
208 |
ggtgcagctgagcgcgcagtgatttcagtggtaggaatgggaggtctaggaaaaactactcttgccaagctagtttttgacagccaaaaggtaacggcaa |
307 |
Q |
| |
|
|| ||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||| ||| |
|
|
| T |
2797421 |
ggcacagctgagcgcacagtgatttcagtggttggaatgggaggtctaggaaaaaccactcttgccaagctagttttcgacagtcaaaaggtaacaacaa |
2797520 |
T |
|
| Q |
308 |
actttgattgtcgtgcttgcgtcacagtttctcaatcatacactgtgagaggtttgttgataaacatgatggagcaattttatcggggaactgaagaccc |
407 |
Q |
| |
|
| |||||||||||||||||| |||||||||||||||||||||| ||||| || | ||||| |||||||||||| |||||| | | | ||||||| ||| |
|
|
| T |
2797521 |
aatttgattgtcgtgcttgcatcacagtttctcaatcatacaccgtgagggggatattgatcaacatgatggaggaattttgtagcgaaactgaaagccc |
2797620 |
T |
|
| Q |
408 |
tcttccacagatgttacacaaaatggatgacaagtcattgattatagaagtgaggcaatacctggaacataagaggtatttgatattctt |
497 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| | ||||||||||||||| |
|
|
| T |
2797621 |
tcttttgcagatgttacacaaaatggatgacaagtcattgattatacaagtgaggcaatacctgcaacataaaaagtatttgatattctt |
2797710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 5 - 497
Target Start/End: Original strand, 2818411 - 2818906
Alignment:
| Q |
5 |
tgtcacttcgtggaattaaggaaagaagtgagaggtataactttcaaatttcacatgaacgaggatcatcaagc---agctatagtactagagagacaga |
101 |
Q |
| |
|
||||| |||||||||| ||||||||||| |||||||||||||| |||||||| ||||||| |||||| || || ||| | | | ||||| |||| |
|
|
| T |
2818411 |
tgtcaattcgtggaatcaaggaaagaagcgagaggtataacttccaaatttcgcatgaacaaggatcctcgtgccaaagcaacggatgtggagagtcaga |
2818510 |
T |
|
| Q |
102 |
aaaaggaagatggcgtgatcatcgactgtcttcccttttcattgaagaaacagaaattgtaggaattgaaggccaaacagaacaattgtctggttggcta |
201 |
Q |
| |
|
| |||| |||||||||||| |||||||||||| ||||||||||||||||||||||| |||||| ||||||||| | |||| || | | ||||||| || |
|
|
| T |
2818511 |
cacaggaggatggcgtgatcctcgactgtcttctcttttcattgaagaaacagaaatcgtaggatttgaaggcccgagagaagaactatatggttggtta |
2818610 |
T |
|
| Q |
202 |
ttggatggtgcagctgagcgcgcagtgatttcagtggtaggaatgggaggtctaggaaaaactactcttgccaagctagtttttgacagccaaaaggtaa |
301 |
Q |
| |
|
||||| |||||||| |||||| ||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2818611 |
ttggagggtgcagccgagcgcacagtgatatcagtggtaggaatggggggtctaggaaaaaccactcttgccaagctagtttttgacagccaaaaggtaa |
2818710 |
T |
|
| Q |
302 |
cggcaaactttgattgtcgtgcttgcgtcacagtttctcaatcatacactgtgagaggtttgttgataaacatgatggagcaattttatcggggaactga |
401 |
Q |
| |
|
| || | ||||||||||| |||||| || ||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||| || | |||| |
|
|
| T |
2818711 |
caacacagtttgattgtcgagcttgcatcgtagtttctcaatcatacactgtgagaggattactgataaaaatgatggagcaattttatcaggaagctga |
2818810 |
T |
|
| Q |
402 |
agaccctcttccacagatgttacacaaaatggatgacaagtcattgattatagaagtgaggcaatacctggaacataagaggtatttgatattctt |
497 |
Q |
| |
|
||||||| || | |||| |||| |||||||||||||| || | |||||||||| || ||| ||||||| ||||||||||||||||| |||||||| |
|
|
| T |
2818811 |
agaccctgatctagagattttacgcaaaatggatgacaggttactgattatagaggtaaggaaatacctagaacataagaggtatttaatattctt |
2818906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 11 - 272
Target Start/End: Original strand, 2790227 - 2790491
Alignment:
| Q |
11 |
ttcgtggaattaaggaaagaagtgagaggtataactttcaaatttcacatgaacgaggatcatcaagcagct---atagtactagagagacagaaaaagg |
107 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||||| | || | ||||||||| || || | |
|
|
| T |
2790227 |
ttcgtggaatcaaggaaagaagtgagaggtataactttcaaatttcacagacaccaggatcatcaagcagcagcaacagcagtagagagacggacaatag |
2790326 |
T |
|
| Q |
108 |
aagatggcgtgatcatcgactgtcttcccttttcattgaagaaacagaaattgtaggaattgaaggccaaacagaacaattgtctggttggctattggat |
207 |
Q |
| |
|
|||||||| ||||| ||| ||||||||||||||||||||||||| | |||||| ||| ||||||||| | ||| |||||||||||||| ||||||| |
|
|
| T |
2790327 |
aagatggcatgatcctcggttgtcttcccttttcattgaagaaactgcaattgtcggatttgaaggcccgagggaagaattgtctggttggttattggag |
2790426 |
T |
|
| Q |
208 |
ggtgcagctgagcgcgcagtgatttcagtggtaggaatgggaggtctaggaaaaactactcttgc |
272 |
Q |
| |
|
|| ||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
2790427 |
ggcacagctgagcgcacagtgatttcagtggttggaatgggaggtctaggaaaaaccactcttgc |
2790491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 319 - 500
Target Start/End: Original strand, 2790491 - 2790672
Alignment:
| Q |
319 |
cgtgcttgcgtcacagtttctcaatcatacactgtgagaggtttgttgataaacatgatggagcaattttatcggggaactgaagaccctcttccacaga |
418 |
Q |
| |
|
||||||||| |||| ||||||||||||| ||| ||||| || | ||||| |||||||||||| |||||| | | | |||||||| ||||||| |||| |
|
|
| T |
2790491 |
cgtgcttgcatcaccgtttctcaatcattcaccgtgagggggatattgatcaacatgatggaggaattttgtagcgaaactgaaggccctcttttgcaga |
2790590 |
T |
|
| Q |
419 |
tgttacacaaaatggatgacaagtcattgattatagaagtgaggcaatacctggaacataagaggtatttgatattcttcga |
500 |
Q |
| |
|
|||||||||||||||||||||||||| | ||| || ||||||||||||||||| ||||||| | |||||||||||||||||| |
|
|
| T |
2790591 |
tgttacacaaaatggatgacaagtcactcattctacaagtgaggcaatacctgaaacataaaaagtatttgatattcttcga |
2790672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 230 - 291
Target Start/End: Original strand, 21945671 - 21945732
Alignment:
| Q |
230 |
tttcagtggtaggaatgggaggtctaggaaaaactactcttgccaagctagtttttgacagc |
291 |
Q |
| |
|
|||| ||||||||||||||||| | ||||||||| ||||| |||||| ||||||||||||| |
|
|
| T |
21945671 |
tttccgtggtaggaatgggagggcaaggaaaaaccactctagccaagaaagtttttgacagc |
21945732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 230 - 291
Target Start/End: Original strand, 22104770 - 22104831
Alignment:
| Q |
230 |
tttcagtggtaggaatgggaggtctaggaaaaactactcttgccaagctagtttttgacagc |
291 |
Q |
| |
|
|||| ||||||||||||||||| | ||||||||| ||||| |||||| ||||||||||||| |
|
|
| T |
22104770 |
tttcggtggtaggaatgggagggcaaggaaaaacaactctagccaagagagtttttgacagc |
22104831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 230 - 291
Target Start/End: Original strand, 22187035 - 22187096
Alignment:
| Q |
230 |
tttcagtggtaggaatgggaggtctaggaaaaactactcttgccaagctagtttttgacagc |
291 |
Q |
| |
|
|||| ||||||||||||||||| | ||||||||| ||||| |||||| ||||||||||||| |
|
|
| T |
22187035 |
tttctgtggtaggaatgggagggcaaggaaaaacaactctagccaagaaagtttttgacagc |
22187096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 235 - 291
Target Start/End: Original strand, 21930473 - 21930529
Alignment:
| Q |
235 |
gtggtaggaatgggaggtctaggaaaaactactcttgccaagctagtttttgacagc |
291 |
Q |
| |
|
||||||||||||||||| | ||||||||| ||||| |||||| ||||||||||||| |
|
|
| T |
21930473 |
gtggtaggaatgggagggcaaggaaaaacaactctagccaagaaagtttttgacagc |
21930529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 235 - 291
Target Start/End: Original strand, 22028052 - 22028108
Alignment:
| Q |
235 |
gtggtaggaatgggaggtctaggaaaaactactcttgccaagctagtttttgacagc |
291 |
Q |
| |
|
||||||||||||||||| | ||||||||| ||||| |||||| ||||||||||||| |
|
|
| T |
22028052 |
gtggtaggaatgggagggcaaggaaaaacaactctagccaagaaagtttttgacagc |
22028108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 235 - 291
Target Start/End: Original strand, 22034569 - 22034625
Alignment:
| Q |
235 |
gtggtaggaatgggaggtctaggaaaaactactcttgccaagctagtttttgacagc |
291 |
Q |
| |
|
||||||||||||||||| | ||||||||| ||||| |||||| ||||||||||||| |
|
|
| T |
22034569 |
gtggtaggaatgggagggcaaggaaaaacaactctagccaagaaagtttttgacagc |
22034625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 291
Target Start/End: Original strand, 22052786 - 22052841
Alignment:
| Q |
236 |
tggtaggaatgggaggtctaggaaaaactactcttgccaagctagtttttgacagc |
291 |
Q |
| |
|
|||||||||||||||| | ||||||||| ||||| |||||| ||||||||||||| |
|
|
| T |
22052786 |
tggtaggaatgggagggcaaggaaaaacaactctagccaagaaagtttttgacagc |
22052841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 235 - 322
Target Start/End: Original strand, 22208072 - 22208159
Alignment:
| Q |
235 |
gtggtaggaatgggaggtctaggaaaaactactcttgccaagctagtttttgacagccaaaaggtaacggcaaactttgattgtcgtg |
322 |
Q |
| |
|
||||| || |||||||| | ||| ||||| ||||||||||||| ||||||||||||| || |||| | | | ||||||||||||||| |
|
|
| T |
22208072 |
gtggttgggatgggagggcaaggtaaaacaactcttgccaagcaagtttttgacagcaaagaggttattggatactttgattgtcgtg |
22208159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 241 - 299
Target Start/End: Complemental strand, 22368320 - 22368262
Alignment:
| Q |
241 |
ggaatgggaggtctaggaaaaactactcttgccaagctagtttttgacagccaaaaggt |
299 |
Q |
| |
|
||||||||||| || |||||||| ||||| |||||| ||||||||||| ||||||||| |
|
|
| T |
22368320 |
ggaatgggaggactgggaaaaaccactctagccaagaaagtttttgacaaccaaaaggt |
22368262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 287
Target Start/End: Complemental strand, 22437045 - 22436996
Alignment:
| Q |
238 |
gtaggaatgggaggtctaggaaaaactactcttgccaagctagtttttga |
287 |
Q |
| |
|
|||||||||||||| | ||||||||||||||| |||||| ||||||||| |
|
|
| T |
22437045 |
gtaggaatgggagggcaaggaaaaactactctggccaagaaagtttttga |
22436996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 235 - 291
Target Start/End: Original strand, 22179469 - 22179525
Alignment:
| Q |
235 |
gtggtaggaatgggaggtctaggaaaaactactcttgccaagctagtttttgacagc |
291 |
Q |
| |
|
||||| ||||||||||| | ||||||||| ||||| |||||| ||||||||||||| |
|
|
| T |
22179469 |
gtggtgggaatgggagggcaaggaaaaacaactctagccaagaaagtttttgacagc |
22179525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0691 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: scaffold0691
Description:
Target: scaffold0691; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 5 - 497
Target Start/End: Complemental strand, 6436 - 5941
Alignment:
| Q |
5 |
tgtcacttcgtggaattaaggaaagaagtgagaggtataactttcaaatttcacatgaacgaggatcatcaag---cagctatagtactagagagacaga |
101 |
Q |
| |
|
||||| |||||||||| ||||| |||||||| ||||||||||||||||||| |||||||| ||||||||||| |||| || || ||||| |||| |
|
|
| T |
6436 |
tgtcaattcgtggaatcaaggacagaagtgaaaggtataactttcaaattttacatgaacctggatcatcaagtgtcagcagcagcacaggagaggcaga |
6337 |
T |
|
| Q |
102 |
aaaaggaagatggcgtgatcatcgactgtcttcccttttcattgaagaaacagaaattgtaggaattgaaggccaaacagaacaattgtctggttggcta |
201 |
Q |
| |
|
||| |||||||||||||||| |||| | ||| ||||||| ||||||||||| ||| |||||||| | ||||||| || ||| |||| | ||||||| || |
|
|
| T |
6336 |
aaatggaagatggcgtgatcctcgattatctgccctttttattgaagaaactgaagttgtaggattcgaaggcccaagagaggaattatatggttggtta |
6237 |
T |
|
| Q |
202 |
ttggatggtgcagctgagcgcgcagtgatttcagtggtaggaatgggaggtctaggaaaaactactcttgccaagctagtttttgacagccaaaaggtaa |
301 |
Q |
| |
|
||||| || ||||||||||| | || |||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6236 |
ttggagagtccagctgagcgcaccgtaatttcagtggtaggaatgggaggtatagggaaaaccactcttgccaagctagtttttgacagccaaaaggtaa |
6137 |
T |
|
| Q |
302 |
cggcaaactttgattgtcgtgcttgcgtcacagtttctcaatcatacactgtgagaggtttgttgataaacatgatggagcaattttatcggggaactga |
401 |
Q |
| |
|
| || | |||||||||||||||||| || ||||||||||| ||||||| |||||||| || | |||||||||||||||||||||| ||||| |||||| |
|
|
| T |
6136 |
caacacaatttgattgtcgtgcttgcatcgcagtttctcaaacatacaccgtgagagggttactcataaacatgatggagcaattttgtcgggaaactga |
6037 |
T |
|
| Q |
402 |
agaccctcttccacagatgttacacaaaatggatgacaagtcattgattatagaagtgaggcaatacctggaacataagaggtatttgatattctt |
497 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
6036 |
agaccctcttccgcaaatgttacacaaaatggatgacaagtcattaattatagaagtgaggcaatacctgcaacataagaggtatttgatattctt |
5941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 291
Target Start/End: Original strand, 27294595 - 27294656
Alignment:
| Q |
230 |
tttcagtggtaggaatgggaggtctaggaaaaactactcttgccaagctagtttttgacagc |
291 |
Q |
| |
|
|||| ||||||||||||||||| | ||||||||| ||||| | |||| ||||||||||||| |
|
|
| T |
27294595 |
tttctgtggtaggaatgggaggacaaggaaaaaccactctagtcaagaaagtttttgacagc |
27294656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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