View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10672_5 (Length: 390)
Name: NF10672_5
Description: NF10672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10672_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 19 - 373
Target Start/End: Complemental strand, 3215311 - 3214958
Alignment:
| Q |
19 |
cttcgcatgcgtataaactctagaacaaacttgtgacctattttcaaaagcagatgcttgcaaaggcaagacaacattcgtgttgaattgcgcgctacct |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
3215311 |
cttcgcatgcgtataaactctagaacaaacttgtgacctattttcaaaagcaaatgcttgcaaaggcaagacaac-ttcgtgttgaattgcgtgctacct |
3215213 |
T |
|
| Q |
119 |
cgtttgataatcgtacggtacaagagtatctcattcgtactcgcaatcttatagacaatcttgcttcaattgatgatccaattcctgccaatcagcactt |
218 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
3215212 |
cgtttgataatcgtacggtgcaagagtatctcattcatactcgcaatcttatagacaatcttgcttcaattgatgatccaattcctgtcaatcagcactt |
3215113 |
T |
|
| Q |
219 |
agatgttattttggaaggtttaccacatggatatagtccagttatctctgttgttgagagtaagtttgatgttattgacatagatgaggttgaatctctg |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3215112 |
agatgttattttggaaggtttaccacatggttatagtccagttatctctgttgttgagagtaagtttgatgttattgacatagatgaggttgaatctctg |
3215013 |
T |
|
| Q |
319 |
ctaattgctcatgaaactcgtcttgacaagttcaagaagaaaactcttgatgatg |
373 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3215012 |
ctaattgctcatgaaactcgtcttgacaagttcaagaagaaaactcttgatgatg |
3214958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 113; Significance: 4e-57; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 19 - 374
Target Start/End: Complemental strand, 32460826 - 32460471
Alignment:
| Q |
19 |
cttcgcatgcgtataaactctagaacaaacttgtgacctattttcaaaagcagatgcttgcaaaggcaagacaacattcgtgttgaattgcgcgctacct |
118 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||||||||||| |||||||||| |||||||||||| || | ||||||||| |||| |||| | |
|
|
| T |
32460826 |
cttcgcatgcgtatgaacttcggaacaaacttgtgacctattttcacaagcagatgcgtgcaaaggcaaggcagt-tacgtgttgaactgcgttctactt |
32460728 |
T |
|
| Q |
119 |
cgtttgataatcgtacggtacaagagtatctcattcgtactcgcaatcttatagacaatcttgctt-caattgatgatccaattcctgccaatcagcact |
217 |
Q |
| |
|
| ||||||||||||||||||| ||| |||| |||| | ||||||| | || || |||||||||| | |||| ||||||| |||| | |||||| | |
|
|
| T |
32460727 |
ctcttgataatcgtacggtacaggagcatcttcttcgcattcgcaatttaattgataatcttgctttccattggtgatccagttcccattactcagcatt |
32460628 |
T |
|
| Q |
218 |
tagatgttattttggaaggtttaccacatggatatagtccagttatctctgttgttgagagtaagtttgatgttattgacatagatgaggttgaatctct |
317 |
Q |
| |
|
||||||| ||||| |||||||||||||| | ||||||||||| || || |||||||| || || ||||| |||||| || |||||||| || ||||| |
|
|
| T |
32460627 |
tagatgtaattttagaaggtttaccacaagagtatagtccagtgatttcagttgttgaaagcaaatttgacactattgatattgatgaggtagagtctct |
32460528 |
T |
|
| Q |
318 |
gctaattgctcatgaaactcgtcttgacaagttcaagaagaaaactcttgatgatgt |
374 |
Q |
| |
|
| ||||||||||||| |||||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
32460527 |
gttaattgctcatgagactcgtcttgacaagttcaagaagaagactattgatgatgt |
32460471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 24 - 356
Target Start/End: Complemental strand, 36399779 - 36399448
Alignment:
| Q |
24 |
catgcgtataaactctagaacaaacttgtgacctattttcaaaagcagatgcttgcaaaggcaagacaacattcgtgttgaattgcgcgctacctcgttt |
123 |
Q |
| |
|
||||||||| |||| | | | ||||||||| | |||||||| || ||||||| ||| ||||| | |||| || |||||||| |||| |||| || || |
|
|
| T |
36399779 |
catgcgtatgaactttgggataaacttgtggcatattttcacaaacagatgcgtgcgaaggcgcgtcaac-ttagtgttgaactgcgttctacttctctt |
36399681 |
T |
|
| Q |
124 |
gataatcgtacggtacaagagtatctcattcgtactcgcaatcttatagacaatcttgcttcaattgatgatccaattcctgccaatcagcacttagatg |
223 |
Q |
| |
|
| |||| ||||||||| || ||||| |||||| ||| ||||| | || ||||| || || || | |||||| |||||| ||||| || || |||| |
|
|
| T |
36399680 |
gcaaatcttacggtacaggattatcttcttcgtattcgtgatcttgttgataatctagcctctataggagatccagttcctgttaatcaacatttggatg |
36399581 |
T |
|
| Q |
224 |
ttattttggaaggtttaccacatggatatagtccagttatctctgttgttgagagtaagtttgatgttattgacatagatgaggttgaatctctgctaat |
323 |
Q |
| |
|
| ||||| ||||||||||| || | | |||||| ||||| ||||| || || || || ||||||||||||||| | || || ||||| ||||| || | |
|
|
| T |
36399580 |
tgattttagaaggtttaccgcaagattttagtcctgttatatctgtagtggaaagcaaatttgatgttattgacgttgacgaagttgagtctcttcttct |
36399481 |
T |
|
| Q |
324 |
tgctcatgaaactcgtcttgacaagttcaagaa |
356 |
Q |
| |
|
|||||||||||| |||||||| || |||||||| |
|
|
| T |
36399480 |
tgctcatgaaacacgtcttgataaattcaagaa |
36399448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 283 - 356
Target Start/End: Complemental strand, 52665923 - 52665850
Alignment:
| Q |
283 |
tttgatgttattgacatagatgaggttgaatctctgctaattgctcatgaaactcgtcttgacaagttcaagaa |
356 |
Q |
| |
|
||||||||||||||||| || || ||||| ||||| || ||||||||||||| |||||||| || |||||||| |
|
|
| T |
52665923 |
tttgatgttattgacattgacgaagttgagtctcttcttcttgctcatgaaacacgtcttgataaattcaagaa |
52665850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 356
Target Start/End: Complemental strand, 24789432 - 24789296
Alignment:
| Q |
220 |
gatgttattttggaaggtttaccacatggatatagtccagttatctctgttgttgagagtaagtttgatgttattgacatagatgaggttgaatctctgc |
319 |
Q |
| |
|
||||| ||||| |||||||||||||| | | |||||| |||| | ||| || || || || ||||||||||||||| | || || ||||| ||||| | |
|
|
| T |
24789432 |
gatgtgattttagaaggtttaccacaagattttagtcctattatatttgtagtggaaagcaaatttgatgttattgacgttgacgaagttgagtctcttc |
24789333 |
T |
|
| Q |
320 |
taattgctcatgaaactcgtcttgacaagttcaagaa |
356 |
Q |
| |
|
| || |||||||||| |||||||| || |||||||| |
|
|
| T |
24789332 |
ttcttactcatgaaacacgtcttgataaattcaagaa |
24789296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University