View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10672_high_1 (Length: 236)
Name: NF10672_high_1
Description: NF10672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10672_high_1 |
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| [»] scaffold0018 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 44649876 - 44649656
Alignment:
| Q |
1 |
cctttgtgcttcatttacaatcaatcaaacatttcaacaattattttttctcttaaaagtctcattcaaaactatactaacaaaatttcaacttgaattt |
100 |
Q |
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| T |
44649876 |
cctttgtgcttcatttacaatcaatcaaacattttaacaattattttttctcttaaa-gtctcattcaaaactatactaacaaaatttcaacttgaattt |
44649778 |
T |
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| Q |
101 |
taccggtttgtccctaaaaacttatttttcccgtctcaacgcctaatgaatttaaatattgcaaactatttttcataattaacttgtacccaaaccaaaa |
200 |
Q |
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| T |
44649777 |
taccggtttgtccctaaaaacctatttttcccgtctcaacgcctaatgaatttaaatattgcaaactatttttcataattaacttgtacccaaaccaaaa |
44649678 |
T |
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| Q |
201 |
caaaagcggcaaattccaaaac |
222 |
Q |
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||||||||||||||||||||| |
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| T |
44649677 |
taaaagcggcaaattccaaaac |
44649656 |
T |
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Target: scaffold0018 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 187770 - 187730
Alignment:
| Q |
4 |
ttgtgcttcatttacaatcaatcaaacatttcaacaattat |
44 |
Q |
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| T |
187770 |
ttgtgcctcatttgcaatcaattaaacatttcaacaattat |
187730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 29160513 - 29160473
Alignment:
| Q |
4 |
ttgtgcttcatttacaatcaatcaaacatttcaacaattat |
44 |
Q |
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| T |
29160513 |
ttgtgattcatttggaatcaatcaaacatttcaacaattat |
29160473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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