View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10672_low_1 (Length: 587)
Name: NF10672_low_1
Description: NF10672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10672_low_1 |
 | |
|
| [»] scaffold0649 (1 HSPs) |
| | |
|
| [»] scaffold0707 (1 HSPs) |
| | |
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Alignment Details
Target: chr6 (Bit Score: 490; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 19 - 579
Target Start/End: Complemental strand, 19747791 - 19747224
Alignment:
| Q |
19 |
atgtgcggcgtgcaaatttagataccaacatactttacatattcagata-------tataaatttagggttgagaagcgtcacagctctgatggagatcc |
111 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19747791 |
atgtgcggcgtgcaaatttagataccatcatactttacatattcagatacacttcatataaatttagggttgagaagcgtcacagctctgatggagatcc |
19747692 |
T |
|
| Q |
112 |
ttcaggttaagaagcgtggtcaatccgactcacaacagctaacggtgcccttcgttcccgacgagctcatcgcagaaatcctatcctttcttaacgtgaa |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
19747691 |
ttcaggttaagaagcgtggtcaatccgactcacaacagctaacggtgcccttcgttcccgacgaacttatcgcagaaatcctatcctttcttaacgtgaa |
19747592 |
T |
|
| Q |
212 |
aaccatcatgcaattaaaatgcgtgagcaagtcatggaactctctcatcaatgattcgaccttcgtacaaaaacacctcaagaagtcttcacaaaaccca |
311 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
19747591 |
aaccatcatgcaattaaaatgtgtgagcaagtcatggaactctctcatcaatgattcgaccttcgtacaaaaacacctcaagaagtcttcacaaaatcca |
19747492 |
T |
|
| Q |
312 |
cacatcatactcacaccaccaactttgaactatcctatcagtagtgtagagtccttccccgtgagtcgtttactcgagaatccttcaaatactgtttttg |
411 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
19747491 |
cacatcatactcacaccaccaactttgaaatatcctatcagtagtgtagagtccttccccgtgagtcgtttactcgagaatccttcaatcactgtttttg |
19747392 |
T |
|
| Q |
412 |
gtgacaatttacatgattcgaatgatacttgtcaggttgttggttcctgcaatggattgttttgcttgattttccattctctccataggaagtatacaaa |
511 |
Q |
| |
|
|||||||||| ||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19747391 |
gtgacaatttccatgatttgaatgacacttgtcaggttattggttcctgcaatggattgttttgcttgattttccattctctccataggaagtatacaaa |
19747292 |
T |
|
| Q |
512 |
atactggttttgtttatggaatcctgccacgagaacaatatctgaagaattagggactttcctatgct |
579 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
19747291 |
atactggttttgtttatggaatcctgccacgagaacaatatctgaagaattagggactttccgatgct |
19747224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 166 - 260
Target Start/End: Original strand, 5978151 - 5978245
Alignment:
| Q |
166 |
ttcccgacgagctcatcgcagaaatcctatcctttcttaacgtgaaaaccatcatgcaattaaaatgcgtgagcaagtcatggaactctctcatc |
260 |
Q |
| |
|
|||| ||||| ||||||| ||||||||||| || |||| ||||||||||||| | ||| || ||||||| ||||||||||||| |||||||| |
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|
| T |
5978151 |
ttcctgacgaactcatcgtcgaaatcctatcgttccttagcgtgaaaaccatcgcacgattcaagtgcgtgaacaagtcatggaacactctcatc |
5978245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 172 - 260
Target Start/End: Original strand, 33568012 - 33568100
Alignment:
| Q |
172 |
acgagctcatcgcagaaatcctatcctttcttaacgtgaaaaccatcatgcaattaaaatgcgtgagcaagtcatggaactctctcatc |
260 |
Q |
| |
|
|||| ||||| || |||||||| || ||||||| |||||| ||||||| ||||| || ||||| ||||| ||||||||||| |||||| |
|
|
| T |
33568012 |
acgaactcatagctgaaatcctttcttttcttagcgtgaagaccatcacacaattcaagtgcgtaagcaaatcatggaactcgctcatc |
33568100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 80; Significance: 3e-37; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 166 - 492
Target Start/End: Original strand, 23085864 - 23086190
Alignment:
| Q |
166 |
ttcccgacgagctcatcgcagaaatcct-atcctttcttaacgtgaaaaccatcatgcaattaaaatgcgtgagcaagtcatggaactctctcatcaatg |
264 |
Q |
| |
|
|||||||||| ||||| || |||||||| || ||| |||||| |||||| ||| || ||| |||||||| ||||||||||||||| ||||| || | |
|
|
| T |
23085864 |
ttcccgacgaactcattgccgaaatccttattctt-cttaacccgaaaacaatcgcgctattcaaatgcgtaagcaagtcatggaacactctcgtctccg |
23085962 |
T |
|
| Q |
265 |
attcgaccttcgtacaaaaacacctcaagaagtcttcacaaaacccacacatcatactcacaccaccaactttgaactatcctatcagtagtgtagagtc |
364 |
Q |
| |
|
|| | | |||| || | || || || |||||||| ||||||||||||| ||||||||||||||| ||||| ||| || |||||||||| ||| || || |
|
|
| T |
23085963 |
atccaatcttcataaagaatcatcttaagaagtcatcacaaaacccacgtctcatactcacaccactaacttcgaagtaccctatcagtaatgtcgaatc |
23086062 |
T |
|
| Q |
365 |
cttccccgtgagtcgtttactcgagaatccttcaaatactgtttttggtgacaatttacatgattcgaatgatacttgtcaggttgttggttcctgcaat |
464 |
Q |
| |
|
|||| | ||||||||||||||||||||| |||| | | ||||| |||||||||| |||| || | || || ||||| |||||||||||||||||| |
|
|
| T |
23086063 |
cttctctgtgagtcgtttactcgagaattcttcgatcattgtttccggtgacaattgccatggatcagaggacacatgtcatgttgttggttcctgcaat |
23086162 |
T |
|
| Q |
465 |
ggattgttttgcttgattttccattctc |
492 |
Q |
| |
|
|||||| |||||||| |||||||||||| |
|
|
| T |
23086163 |
ggattgctttgcttgcttttccattctc |
23086190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 2e-20; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 166 - 313
Target Start/End: Original strand, 15507858 - 15508005
Alignment:
| Q |
166 |
ttcccgacgagctcatcgcagaaatcctatcctttcttaacgtgaaaaccatcatgcaattaaaatgcgtgagcaagtcatggaactctctcatcaatga |
265 |
Q |
| |
|
|||||||||||||||| || ||| |||||||||| |||||| | ||||||||| ||||| | |||||| |||||||||||||||| ||||||| ||| |
|
|
| T |
15507858 |
ttcccgacgagctcatagccgaagtcctatccttccttaacataaaaaccatcgtgcaactcaaatgcttgagcaagtcatggaaagctctcatatctga |
15507957 |
T |
|
| Q |
266 |
ttcgaccttcgtacaaaaacacctcaagaagtcttcacaaaacccaca |
313 |
Q |
| |
|
| | |||||| | |||| ||||| |||||||| |||||||| ||||| |
|
|
| T |
15507958 |
tccaaccttcatcgaaaagcaccttaagaagtcgtcacaaaagccaca |
15508005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 177 - 320
Target Start/End: Original strand, 26235981 - 26236124
Alignment:
| Q |
177 |
ctcatcgcagaaatcctatcctttcttaacgtgaaaaccatcatgcaattaaaatgcgtgagcaagtcatggaactctctcatcaatgattcgaccttcg |
276 |
Q |
| |
|
|||||| | |||||||| ||||| ||| ||| |||||| ||| || ||| ||||||||||||||||| |||||| |||||||| |||| | ||||||| |
|
|
| T |
26235981 |
ctcatcaccgaaatcctgtccttgctttgcgttaaaaccctcacgcgattcaaatgcgtgagcaagtcctggaacactctcatctctgatccaaccttcg |
26236080 |
T |
|
| Q |
277 |
tacaaaaacacctcaagaagtcttcacaaaacccacacatcata |
320 |
Q |
| |
|
| | || || || |||||||| |||||||| | ||||||||| |
|
|
| T |
26236081 |
tcgacaaccatcttaagaagtcatcacaaaaacagcacatcata |
26236124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 208 - 261
Target Start/End: Original strand, 26255963 - 26256016
Alignment:
| Q |
208 |
tgaaaaccatcatgcaattaaaatgcgtgagcaagtcatggaactctctcatca |
261 |
Q |
| |
|
||||||||||| ||| ||| ||||||||||||||||| |||||| ||||||||| |
|
|
| T |
26255963 |
tgaaaaccatcgtgctattcaaatgcgtgagcaagtcttggaacactctcatca |
26256016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 228 - 260
Target Start/End: Original strand, 24034934 - 24034966
Alignment:
| Q |
228 |
aaatgcgtgagcaagtcatggaactctctcatc |
260 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |
|
|
| T |
24034934 |
aaatgcgtgagcaagtcatggaacgctctcatc |
24034966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 177 - 298
Target Start/End: Complemental strand, 11346075 - 11345954
Alignment:
| Q |
177 |
ctcatcgcagaaatcctatcctttcttaacgtgaaaaccatcatgcaattaaaatgcgtgagcaagtcatggaactctctcatcaatgattcgaccttcg |
276 |
Q |
| |
|
||||| || ||||||||||| || ||||||||||||||||| | ||||| |||||||||||||||||||||||| |||||||| ||| | |||||| |
|
|
| T |
11346075 |
ctcatagccgaaatcctatcattacttaacgtgaaaaccattgtccaattcaaatgcgtgagcaagtcatggaacactctcatctccgatccacccttcg |
11345976 |
T |
|
| Q |
277 |
tacaaaaacacctcaagaagtc |
298 |
Q |
| |
|
| ||||||||||| || ||||| |
|
|
| T |
11345975 |
tccaaaaacaccttaaaaagtc |
11345954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 235 - 286
Target Start/End: Complemental strand, 11359916 - 11359865
Alignment:
| Q |
235 |
tgagcaagtcatggaactctctcatcaatgattcgaccttcgtacaaaaaca |
286 |
Q |
| |
|
||||||||||||||||| |||||||| |||| |||||||||| |||||||| |
|
|
| T |
11359916 |
tgagcaagtcatggaacactctcatctctgatccgaccttcgtccaaaaaca |
11359865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 201 - 337
Target Start/End: Original strand, 23839864 - 23840000
Alignment:
| Q |
201 |
cttaacgtgaaaaccatcatgcaattaaaatgcgtgagcaagtcatggaactctctcatcaatgattcgaccttcgtacaaaaacacctcaagaagtctt |
300 |
Q |
| |
|
|||||||||||||||||| ||| ||| ||||| |||||||||||||||||| |||||||| ||| | ||| || ||||| |||| || ||||| | |
|
|
| T |
23839864 |
cttaacgtgaaaaccatcttgcgattcaaatgtgtgagcaagtcatggaacactctcatctccgatccagcctatgtcaaaaaataccttaacaagtcgt |
23839963 |
T |
|
| Q |
301 |
cacaaaacccacacatcatactcacaccaccaacttt |
337 |
Q |
| |
|
|| | ||||||||| ||||||||| |||||||||||| |
|
|
| T |
23839964 |
caaataacccacacctcatactcaaaccaccaacttt |
23840000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 446 - 482
Target Start/End: Complemental strand, 10554203 - 10554167
Alignment:
| Q |
446 |
ggttgttggttcctgcaatggattgttttgcttgatt |
482 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
10554203 |
ggttgttggttcatgcaatggattgttgtgcttgatt |
10554167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 446 - 482
Target Start/End: Complemental strand, 10571933 - 10571897
Alignment:
| Q |
446 |
ggttgttggttcctgcaatggattgttttgcttgatt |
482 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
10571933 |
ggttgttggttcatgcaatggattgttgtgcttgatt |
10571897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 177 - 325
Target Start/End: Original strand, 36339250 - 36339398
Alignment:
| Q |
177 |
ctcatcgcagaaatcctatcctttcttaacgtgaaaaccatcatgcaattaaaatgcgtgagcaagtcatggaactctctcatcaatgattcgaccttcg |
276 |
Q |
| |
|
|||||||| |||||||||| || |||| |||||||||||| ||| ||| || || |||||||||||||||||| |||||||| ||| | || ||| |
|
|
| T |
36339250 |
ctcatcgccgaaatcctattgttacttagcgtgaaaaccattgtgcgattcaagtgtgtgagcaagtcatggaacactctcatctcagatccaactttca |
36339349 |
T |
|
| Q |
277 |
tacaaaaacacctcaagaagtcttcacaaaacccacacatcatactcac |
325 |
Q |
| |
|
| ||| ||||| ||||| |||||||||||||| ||| |||||||||| |
|
|
| T |
36339350 |
tcaaaatgcaccttaagaaatcttcacaaaaccctcacttcatactcac |
36339398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0649 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0649
Description:
Target: scaffold0649; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 172 - 318
Target Start/End: Original strand, 4592 - 4738
Alignment:
| Q |
172 |
acgagctcatcgcagaaatcctatcctttcttaacgtgaaaaccatcatgcaattaaaatgcgtgagcaagtcatggaactctctcatcaatgattcgac |
271 |
Q |
| |
|
|||| ||| |||| |||||||||||||| ||| |||||||| | | | | || | ||||| |||||||| ||||||||||| |||||| ||| | | |
|
|
| T |
4592 |
acgacctcgtcgccgaaatcctatccttccttgacgtgaaatctcttacgaaactcaaatgtgtgagcaaatcatggaactcactcatctccgatcccat |
4691 |
T |
|
| Q |
272 |
cttcgtacaaaaacacctcaagaagtcttcacaaaacccacacatca |
318 |
Q |
| |
|
|||||| |||| ||||||||||| || ||||||||||||||||||| |
|
|
| T |
4692 |
cttcgtccaaatgcacctcaagaaatcatcacaaaacccacacatca |
4738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0707 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0707
Description:
Target: scaffold0707; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 172 - 260
Target Start/End: Original strand, 4406 - 4494
Alignment:
| Q |
172 |
acgagctcatcgcagaaatcctatcctttcttaacgtgaaaaccatcatgcaattaaaatgcgtgagcaagtcatggaactctctcatc |
260 |
Q |
| |
|
|||| ||||| || |||||||| || ||||||| |||||| ||||||| ||||| || ||||| ||||| ||||||||||| |||||| |
|
|
| T |
4406 |
acgaactcatagctgaaatcctttcttttcttagcgtgaagaccatcacacaattcaagtgcgtaagcaaatcatggaactcgctcatc |
4494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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