View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10672_low_10 (Length: 252)

Name: NF10672_low_10
Description: NF10672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10672_low_10
NF10672_low_10
[»] chr6 (3 HSPs)
chr6 (9-252)||(19746788-19747031)
chr6 (78-130)||(33568839-33568891)
chr6 (78-140)||(33576015-33576077)
[»] chr7 (6 HSPs)
chr7 (9-122)||(23999554-23999667)
chr7 (27-127)||(24021626-24021726)
chr7 (91-133)||(24016641-24016683)
chr7 (91-141)||(26237458-26237508)
chr7 (91-141)||(26256619-26256669)
chr7 (105-141)||(24035595-24035631)
[»] chr3 (3 HSPs)
chr3 (9-140)||(36339960-36340091)
chr3 (75-140)||(25901439-25901504)
chr3 (90-140)||(25915472-25915522)
[»] scaffold0707 (1 HSPs)
scaffold0707 (78-130)||(5233-5285)
[»] chr8 (4 HSPs)
chr8 (9-125)||(11338670-11338786)
chr8 (9-125)||(11345195-11345311)
chr8 (9-125)||(11359073-11359189)
chr8 (9-121)||(11339513-11339625)
[»] chr5 (1 HSPs)
chr5 (9-135)||(23086632-23086758)
[»] chr4 (5 HSPs)
chr4 (80-141)||(23847337-23847398)
chr4 (90-140)||(10571451-10571501)
chr4 (75-128)||(10467900-10467953)
chr4 (75-128)||(10482038-10482091)
chr4 (82-126)||(23840539-23840583)
[»] chr2 (1 HSPs)
chr2 (90-138)||(25376921-25376969)


Alignment Details
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 9 - 252
Target Start/End: Original strand, 19746788 - 19747031
Alignment:
Q  9 aagcaaaggcagtccatcagaacatgaagagttggctgaaagtgtgggacttcatcaaaaccagatggtagcaaaaattgtgtgtatgtctcagtcgaaa 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  19746788 aagcaaaggcagtccatcagaacatgaagagttggctgaaagtgtgggacttcatcaaaaccaaatggcagcaaaaattgtgtgtatgtctcagtcgaaa 19746887  T
Q  109 gatcaagggaaacaatcacaaattgctcaacataattcatacattcgtaatgataagaagcacaaaaatagttgcgaataaccaaccaattaatcttgcc 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19746888 gatcaagggaaacaatcacaaattgctcaacataattcatacattcgtaatgataagaagcacaaaaatagttgcgaataaccaaccaattaatcttgcc 19746987  T
Q  209 acttaaatgcacgccattgttatttcgattgaattgaatacatc 252  Q
    |||||||||||||||||||||||||||||||| |||||||||||    
T  19746988 acttaaatgcacgccattgttatttcgattgatttgaatacatc 19747031  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 78 - 130
Target Start/End: Complemental strand, 33568891 - 33568839
Alignment:
Q  78 agcaaaaattgtgtgtatgtctcagtcgaaagatcaagggaaacaatcacaaa 130  Q
    ||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  33568891 agcaaaaattgtgtgtatgtctccggcgaaagatcaagggaaacaatcacaaa 33568839  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 78 - 140
Target Start/End: Complemental strand, 33576077 - 33576015
Alignment:
Q  78 agcaaaaattgtgtgtatgtctcagtcgaaagatcaagggaaacaatcacaaattgctcaaca 140  Q
    ||||||||||||||||||||||| ||| |||||||||| |||||||||||| ||| |||||||    
T  33576077 agcaaaaattgtgtgtatgtctctgtcaaaagatcaagcgaaacaatcacacatttctcaaca 33576015  T

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Target: chr7 (Bit Score: 62; Significance: 7e-27; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 9 - 122
Target Start/End: Original strand, 23999554 - 23999667
Alignment:
Q  9 aagcaaaggcagtccatcagaacatgaagagttggctgaaagtgtgggacttcatcaaaaccagatggtagcaaaaattgtgtgtatgtctcagtcgaaa 108  Q
    ||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||| ||  ||||||||||||||  ||||||| |  ||| |||    
T  23999554 aagcaaaggtagtccatgaaaacatgaagagttggctgaaagtgtgggacttcatcaaaactaggaggtagcaaaaattgcatgtatgtattggtcaaaa 23999653  T
Q  109 gatcaagggaaaca 122  Q
    ||| ||||||||||    
T  23999654 gattaagggaaaca 23999667  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 127
Target Start/End: Complemental strand, 24021726 - 24021626
Alignment:
Q  27 agaacatgaagagttggctgaaagtgtgggacttcatcaaaaccagatggtagcaaaaattgtgtgtatgtctcagtcgaaagatcaagggaaacaatca 126  Q
    ||||| |||||||||||||||||   ||| || ||||||||| | || || | |||||||||  ||  |||||| |||||||||||||||||||||||||    
T  24021726 agaacttgaagagttggctgaaaacatggcacctcatcaaaatcggaaggcaacaaaaattgcatggttgtctcggtcgaaagatcaagggaaacaatca 24021627  T
Q  127 c 127  Q
    |    
T  24021626 c 24021626  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 91 - 133
Target Start/End: Complemental strand, 24016683 - 24016641
Alignment:
Q  91 tgtatgtctcagtcgaaagatcaagggaaacaatcacaaattg 133  Q
    |||||||||| |||||||||||||| |||||||||||||||||    
T  24016683 tgtatgtctccgtcgaaagatcaagagaaacaatcacaaattg 24016641  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 91 - 141
Target Start/End: Complemental strand, 26237508 - 26237458
Alignment:
Q  91 tgtatgtctcagtcgaaagatcaagggaaacaatcacaaattgctcaacat 141  Q
    |||||||||  |||||||||||||| |||| ||||||||||||||||||||    
T  26237508 tgtatgtctttgtcgaaagatcaagcgaaagaatcacaaattgctcaacat 26237458  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 91 - 141
Target Start/End: Complemental strand, 26256669 - 26256619
Alignment:
Q  91 tgtatgtctcagtcgaaagatcaagggaaacaatcacaaattgctcaacat 141  Q
    |||||||||| || ||||||||||| |||| ||||||||||||||||||||    
T  26256669 tgtatgtctccgttgaaagatcaagcgaaataatcacaaattgctcaacat 26256619  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 141
Target Start/End: Complemental strand, 24035631 - 24035595
Alignment:
Q  105 gaaagatcaagggaaacaatcacaaattgctcaacat 141  Q
    ||||||||||| |||||||||||||||||| ||||||    
T  24035631 gaaagatcaagtgaaacaatcacaaattgcacaacat 24035595  T

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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 140
Target Start/End: Complemental strand, 36340091 - 36339960
Alignment:
Q  9 aagcaaaggcagtccatcagaacatgaagagttggctgaaagtgtgggacttcatcaaaaccagatggtagcaaaaattgtgtgtatgtctcagtcgaaa 108  Q
    |||||||||||||||||||||||  |||||| ||||| || |  ||| || || | |||||| |  || |||||||| ||  |||||||||| |||||||    
T  36340091 aagcaaaggcagtccatcagaacccgaagagatggctcaacgcatggcacctccttaaaacctgcaggaagcaaaaactgcctgtatgtctccgtcgaaa 36339992  T
Q  109 gatcaagggaaacaatcacaaattgctcaaca 140  Q
    ||||||| ||||||||||| ||||||||||||    
T  36339991 gatcaagcgaaacaatcaccaattgctcaaca 36339960  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 75 - 140
Target Start/End: Original strand, 25901439 - 25901504
Alignment:
Q  75 ggtagcaaaaattgtgtgtatgtctcagtcgaaagatcaagggaaacaatcacaaattgctcaaca 140  Q
    |||||||| || || ||||||| |||||| || |||||||| |||||||||||| |||||||||||    
T  25901439 ggtagcaacaactgagtgtatgactcagtggacagatcaagcgaaacaatcacatattgctcaaca 25901504  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 140
Target Start/End: Original strand, 25915472 - 25915522
Alignment:
Q  90 gtgtatgtctcagtcgaaagatcaagggaaacaatcacaaattgctcaaca 140  Q
    ||||||| |||||| || |||||||| |||||||||||| |||||||||||    
T  25915472 gtgtatgactcagtggacagatcaagcgaaacaatcacatattgctcaaca 25915522  T

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Target: scaffold0707 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0707
Description:

Target: scaffold0707; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 78 - 130
Target Start/End: Complemental strand, 5285 - 5233
Alignment:
Q  78 agcaaaaattgtgtgtatgtctcagtcgaaagatcaagggaaacaatcacaaa 130  Q
    ||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  5285 agcaaaaattgtgtgtatgtctccggcgaaagatcaagggaaacaatcacaaa 5233  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 9 - 125
Target Start/End: Original strand, 11338670 - 11338786
Alignment:
Q  9 aagcaaaggcagtccatcagaacatgaagagttggctgaaagtgtgggacttcatcaaaaccagatggtagcaaaaattgtgtgtatgtctcagtcgaaa 108  Q
    |||||||| | |||||  ||||| ||||||||||||||||||  |||||  ||||||| |||||| || |   |||||||  ||||||||||||| ||||    
T  11338670 aagcaaagtcggtccaaaagaacctgaagagttggctgaaagcatgggatctcatcaagaccagaaggcaaacaaaattgcatgtatgtctcagttgaaa 11338769  T
Q  109 gatcaagggaaacaatc 125  Q
    |||||||||||||||||    
T  11338770 gatcaagggaaacaatc 11338786  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 9 - 125
Target Start/End: Original strand, 11345195 - 11345311
Alignment:
Q  9 aagcaaaggcagtccatcagaacatgaagagttggctgaaagtgtgggacttcatcaaaaccagatggtagcaaaaattgtgtgtatgtctcagtcgaaa 108  Q
    |||||||| | |||||  ||||| ||||||||||||||||||  |||||| |||||||||||| | || |   |||||||  ||||||||||||| ||||    
T  11345195 aagcaaagtcggtccaaaagaacctgaagagttggctgaaagcttgggacctcatcaaaaccaaaaggcaaacaaaattgcatgtatgtctcagttgaaa 11345294  T
Q  109 gatcaagggaaacaatc 125  Q
    | |||||||||||||||    
T  11345295 ggtcaagggaaacaatc 11345311  T

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Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 9 - 125
Target Start/End: Original strand, 11359073 - 11359189
Alignment:
Q  9 aagcaaaggcagtccatcagaacatgaagagttggctgaaagtgtgggacttcatcaaaaccagatggtagcaaaaattgtgtgtatgtctcagtcgaaa 108  Q
    |||||||| | |||||  |||| |||||||||||||| ||||  |||||| |||||||||||||| || ||  |||||||  |||||| |||||| ||||    
T  11359073 aagcaaagtcggtccaaaagaaaatgaagagttggctaaaagcatgggacctcatcaaaaccagaaggcagtgaaaattgcatgtatgcctcagttgaaa 11359172  T
Q  109 gatcaagggaaacaatc 125  Q
    |||||||||| ||||||    
T  11359173 gatcaagggagacaatc 11359189  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 9 - 121
Target Start/End: Original strand, 11339513 - 11339625
Alignment:
Q  9 aagcaaaggcagtccatcagaacatgaagagttggctgaaagtgtgggacttcatcaaaaccagatggtagcaaaaattgtgtgtatgtctcagtcgaaa 108  Q
    |||||||| | |||||  ||||| |||||||||||||||||||  || || |||||||||||||| ||||   |||||||  | ||||||||| | || |    
T  11339513 aagcaaagccggtccaaaagaacctgaagagttggctgaaagtagggtacctcatcaaaaccagaaggtaaacaaaattgcatatatgtctcaattgata 11339612  T
Q  109 gatcaagggaaac 121  Q
    |||||||||||||    
T  11339613 gatcaagggaaac 11339625  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 135
Target Start/End: Complemental strand, 23086758 - 23086632
Alignment:
Q  9 aagcaaaggcagtccatcagaacatgaagagttggctgaaagtgtgggacttcatcaaaaccagatggtagcaaaaattgtgtgtatgtctcagtcgaaa 108  Q
    ||||||||||||||| ||||||||||||||| ||||||| | | ||| || |||||||||||    || ||||| || ||  |||||||||| || || |    
T  23086758 aagcaaaggcagtccttcagaacatgaagagatggctgatattctggcacctcatcaaaaccttgaggcagcaacaactgcttgtatgtctccgttgata 23086659  T
Q  109 gatcaagggaaacaatcacaaattgct 135  Q
    ||||||| |||||||| ||||| ||||    
T  23086658 gatcaagcgaaacaatgacaaactgct 23086632  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 80 - 141
Target Start/End: Original strand, 23847337 - 23847398
Alignment:
Q  80 caaaaattgtgtgtatgtctcagtcgaaagatcaagggaaacaatcacaaattgctcaacat 141  Q
    |||||||||  |||||||||| ||||||||||||||||||| |||||| | ||| |||||||    
T  23847337 caaaaattggatgtatgtctcggtcgaaagatcaagggaaagaatcacgagttgatcaacat 23847398  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 140
Target Start/End: Original strand, 10571451 - 10571501
Alignment:
Q  90 gtgtatgtctcagtcgaaagatcaagggaaacaatcacaaattgctcaaca 140  Q
    ||||||| |||||| || |||||||| |||||||||||| |||||||||||    
T  10571451 gtgtatgactcagttgagagatcaagtgaaacaatcacatattgctcaaca 10571501  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 128
Target Start/End: Complemental strand, 10467953 - 10467900
Alignment:
Q  75 ggtagcaaaaattgtgtgtatgtctcagtcgaaagatcaagggaaacaatcaca 128  Q
    |||||||| ||||| |||||||||||||| || |||||||| |||| |||||||    
T  10467953 ggtagcaacaattgagtgtatgtctcagttgagagatcaagtgaaagaatcaca 10467900  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 128
Target Start/End: Complemental strand, 10482091 - 10482038
Alignment:
Q  75 ggtagcaaaaattgtgtgtatgtctcagtcgaaagatcaagggaaacaatcaca 128  Q
    |||||||| ||||| |||||||||||||| || |||||||| |||| |||||||    
T  10482091 ggtagcaacaattgagtgtatgtctcagttgagagatcaagtgaaagaatcaca 10482038  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 126
Target Start/End: Complemental strand, 23840583 - 23840539
Alignment:
Q  82 aaaattgtgtgtatgtctcagtcgaaagatcaagggaaacaatca 126  Q
    |||||||  |||||||||| ||||||||||||||||||| |||||    
T  23840583 aaaattggatgtatgtctcggtcgaaagatcaagggaaagaatca 23840539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 138
Target Start/End: Complemental strand, 25376969 - 25376921
Alignment:
Q  90 gtgtatgtctcagtcgaaagatcaagggaaacaatcacaaattgctcaa 138  Q
    ||||||||||||||||| ||||| || |||||||||||| ||| |||||    
T  25376969 gtgtatgtctcagtcgagagatcgagcgaaacaatcacatatttctcaa 25376921  T

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