View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10672_low_3 (Length: 480)
Name: NF10672_low_3
Description: NF10672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10672_low_3 |
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| [»] scaffold0103 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 116; Significance: 8e-59; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 16 - 181
Target Start/End: Complemental strand, 13486113 - 13485944
Alignment:
| Q |
16 |
caagaaataaggaaaatcattgccattttgaaaactacggaaaatgtaagttct----atgcttcatccgtaccggtcaatgttcccacaaaccattttg |
111 |
Q |
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| T |
13486113 |
caagaaatatggaaaatcattgccattttgaaaaccactgaaaatgtaagttctcttgatgcttcatccgtaccggccaatgttcccacaaaccattttg |
13486014 |
T |
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| Q |
112 |
attatgtggatnnnnnnnttatgatgttactgaaacttcaattattgctccagttattgcatgttgaacc |
181 |
Q |
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| T |
13486013 |
attatgtggataaaaaaattatgatgttactgaaacttcaattattgctccagttattgcatgttgaacc |
13485944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 175 - 297
Target Start/End: Complemental strand, 13485920 - 13485798
Alignment:
| Q |
175 |
ttgaacctaatattgatcttgtttttaaaacttctgtcaaacaatgtgttgagtttgtgagtcaagtagatcttatctctaataaggttgttaaaccatc |
274 |
Q |
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| T |
13485920 |
ttgaacctaatattgatcttgtttttaaaacctctgtcaaacaatgtgttgagtttatgagtcaagtagatcttatctctaataaggttgttaaaccatc |
13485821 |
T |
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| Q |
275 |
tagtacacttgatatttttgttg |
297 |
Q |
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| T |
13485820 |
tagtacacttgatatttttgttg |
13485798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 317 - 453
Target Start/End: Complemental strand, 13485746 - 13485612
Alignment:
| Q |
317 |
tcttgtttctgaaacatcaactgagaccaaataaatcaacaaaagaaaccgcccctaatgatgttggaccatcccatgtccaattagatattatctttga |
416 |
Q |
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| T |
13485746 |
tcttgtttctgaaacatcaactga--ccaaataaatcaacaaaagaaaccgccgctaatgattttggaccatcccatgtccaattagatattatctttga |
13485649 |
T |
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| Q |
417 |
actttcttttggaaatgttgttgatgtgtctgtgctc |
453 |
Q |
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| T |
13485648 |
actttcttttgaaaatgttgttgatgtgtctgtgctc |
13485612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0103 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0103
Description:
Target: scaffold0103; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 171 - 297
Target Start/End: Original strand, 36266 - 36392
Alignment:
| Q |
171 |
catgttgaacctaatattgatcttgtttttaaaacttctgtcaaacaatgtgttgagtttgtgagtcaagtagatcttatctctaataaggttgttaaac |
270 |
Q |
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| T |
36266 |
catgttgaacttaatgtcgatcttgtgtttgaaactcctgtgaaaccctgtgttgattatacgagtcaagtagatcatgtctctgataaggttgttaaaa |
36365 |
T |
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| Q |
271 |
catctagtacacttgatatttttgttg |
297 |
Q |
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| T |
36366 |
catctagtacacctgatatttttgttg |
36392 |
T |
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