View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10672_low_4 (Length: 396)
Name: NF10672_low_4
Description: NF10672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10672_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 43601216 - 43600967
Alignment:
| Q |
1 |
acgcatatagttcatttcattttacattattacattctcatgaatgagatttgtaaaaataattaagaaagagcttttattgagtaaagaaaaagtatcg |
100 |
Q |
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| T |
43601216 |
acgcatatagttcatttcattttacattattacattctcatgaatgagatttgtaaatataattaagaaagtgcttttattaagtaaagaaaaagtatcg |
43601117 |
T |
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| Q |
101 |
tttcaaaacaataaaaatagagtaaattaaaatgtccctctctcctgccaataatctaacagtattttttccagaacaaataccaaatatgagnnnnnnn |
200 |
Q |
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| T |
43601116 |
tttcaaaacaataaaaatagagtaaattaaaatgtccctctctcctgccaataatctaacagtattttttccagaacaaataccaaatatgagttttttt |
43601017 |
T |
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| Q |
201 |
atgttcctaccgataataacttcattagaacagttacatattgttttcac |
250 |
Q |
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| T |
43601016 |
atgttcctaccgataataacttcattagaacagttacatattgttttcac |
43600967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 379
Target Start/End: Complemental strand, 43600876 - 43600835
Alignment:
| Q |
338 |
ggaacatatatgtgatcagaagagccaccagcatgaggaagt |
379 |
Q |
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| T |
43600876 |
ggaacatatatgtgatcagaagagccaccagcatgaggaagt |
43600835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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