View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10672_low_5 (Length: 353)
Name: NF10672_low_5
Description: NF10672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10672_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 334
Target Start/End: Complemental strand, 37953904 - 37953571
Alignment:
| Q |
1 |
ttcgtagtcgtggccaccacttcggattcgaatctgcatgtcatggcgttgggaacaaattacagtggcttgaatttctggtacttcaagaggtatcaca |
100 |
Q |
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| T |
37953904 |
ttcgtagtcgtggccaccacttcggattcgaatctgcatgtcatggcgtcgggaacaaattacagtggcttgaatttctggtacttcaagaggtatcaca |
37953805 |
T |
|
| Q |
101 |
atgacaaggggttttgcagttgtgttggatgtgaatctaaggttttgaacagaaaaccggagtatagatgagtatgaggagtgtgtttgggtgtacacaa |
200 |
Q |
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| T |
37953804 |
atgacaaggggttttgcagttgtgttggatgtgaatctaaggttttgaacagaaaaccggagtatagatgagtatgaggagtgtgtttgggtgtacacaa |
37953705 |
T |
|
| Q |
201 |
actttgagactgaagtggaattatgattagaataactttcaaggcattgaatgaagctttcatgattattatcagctgcataagatgtaataaaagaaaa |
300 |
Q |
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| T |
37953704 |
actttgagactgaagtggaattatgattagaataactttcaaggcattgaatgaagctttcatgattattatcagctgcataagatgtaataaaagaaaa |
37953605 |
T |
|
| Q |
301 |
taacaaagcagtaatagcaacaacggttaaatac |
334 |
Q |
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| T |
37953604 |
taacaaagcaataatagcaacagcagttaaatac |
37953571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 62
Target Start/End: Original strand, 38062217 - 38062273
Alignment:
| Q |
6 |
agtcgtggccaccacttcggattcgaatctgcatgtcatggcgttgggaacaaatta |
62 |
Q |
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| T |
38062217 |
agtcgtggccgccgcttcggattcgaatctgcaggtcatgtctttgggaacagatta |
38062273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 62
Target Start/End: Complemental strand, 38072565 - 38072509
Alignment:
| Q |
6 |
agtcgtggccaccacttcggattcgaatctgcatgtcatggcgttgggaacaaatta |
62 |
Q |
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|||||||||||||||| || |||||||| |||||| ||||| |||||||||| |||| |
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| T |
38072565 |
agtcgtggccaccactacgaattcgaatttgcatgccatggtgttgggaacagatta |
38072509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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