View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10672_low_9 (Length: 263)
Name: NF10672_low_9
Description: NF10672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10672_low_9 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 255; Significance: 1e-142; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 34049703 - 34049965
Alignment:
| Q |
1 |
cagacttggtacatatctggttaggaacctacattgattttacccaatagtatgaagtaggttgaaaagagtatttgctagcactacccttctttctgtc |
100 |
Q |
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| T |
34049703 |
cagacttggtacatatctggttaggaacctacattgattttatccaatagtatgaagtaggttgaaaagagtatttgctagcactacccttctttctgtc |
34049802 |
T |
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| Q |
101 |
attctcacttattttgtgatttttcttctctcgaatattggtaattagatgccctgcttgtttgaaatcctggtgggcttgacaaaatcacaggtggttt |
200 |
Q |
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| T |
34049803 |
attctcacttattttgtgatttttcttctctcgaatattggtaattagatgccctgcttgtttgaaatcctgatgggcttgacaaaatcacaggtggttt |
34049902 |
T |
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| Q |
201 |
gccaaacttactgtgaaaccgaacatacacgtcgtagatatgaatacatcatttgtatttcta |
263 |
Q |
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| T |
34049903 |
gccaaacttactgtgaaaccgaacatacacgtcgtagatatgaatacatcatttgtatttcta |
34049965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 117 - 263
Target Start/End: Complemental strand, 34582271 - 34582130
Alignment:
| Q |
117 |
tgatttttcttctctcgaatattggtaattagatgccctgcttgtttgaaatcctggtgggcttgacaaaatcacaggtggtttgccaaacttactgtga |
216 |
Q |
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| T |
34582271 |
tgatttttcttctctcgaatattggtaattagatgccgtgcttgtttgaaatcacggtgggcatgacaaaatcac-ggtggtttgccaa----actgtga |
34582177 |
T |
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| Q |
217 |
aaccgaacatacacgtcgtagatatgaatacatcatttgtatttcta |
263 |
Q |
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| T |
34582176 |
agccaaacatacatgtcatagatttgaatacatcatttgtagttcta |
34582130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 34582426 - 34582344
Alignment:
| Q |
1 |
cagacttggtacatatctggttaggaacctacattgattttacccaatagtatgaagtaggttgaaaagagtatttgctagca |
83 |
Q |
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|||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||| |
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| T |
34582426 |
cagacttggtacatatttggttagaaacctacattgattttacccaataatatgaagtatgttgaaaagcgtatttgctagca |
34582344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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