View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10673_high_5 (Length: 251)
Name: NF10673_high_5
Description: NF10673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10673_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 37213134 - 37213392
Alignment:
| Q |
1 |
cctactgggagtaaaaatgagaagatcacttttcatgtgtggtgaacnnnnnnntattacttttttagttattaatattggtcaattaaaattctatggt |
100 |
Q |
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| T |
37213134 |
cctactgtgagtaaaaatgagaagatcacttttcatgtgtggtgaacaaaaagatgttacttttttagttattaatattggtcaattaaaattctatggt |
37213233 |
T |
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| Q |
101 |
ccatcaggaaatgaaaaatgacttccacttgaagtaatatttttaataaaaatgtca-----------------acttttctataaggcaaaatcatcac |
183 |
Q |
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| T |
37213234 |
ccatcaggaaatgaaaaatgacttccacttgaagtaatatttttaataaaaatgtcaacttttaaataatttatacttttctataaggcaaaatcatcac |
37213333 |
T |
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| Q |
184 |
caaattcacagaaataacacataacacttcaaggtttaacaaatttcatactcctatgc |
242 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37213334 |
caaattcacagaaataacacataacacttcaaggtttaacaaatttcatactcctatgc |
37213392 |
T |
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