View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10673_high_6 (Length: 250)

Name: NF10673_high_6
Description: NF10673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10673_high_6
NF10673_high_6
[»] chr1 (3 HSPs)
chr1 (2-237)||(24276217-24276454)
chr1 (42-106)||(16111355-16111419)
chr1 (109-197)||(16111241-16111327)
[»] chr6 (1 HSPs)
chr6 (2-237)||(11165789-11166027)
[»] chr3 (2 HSPs)
chr3 (2-237)||(5704747-5704984)
chr3 (109-192)||(16972784-16972866)
[»] scaffold0120 (1 HSPs)
scaffold0120 (2-237)||(1858-2097)
[»] chr4 (3 HSPs)
chr4 (55-192)||(16163505-16163641)
chr4 (54-182)||(16167579-16167711)
chr4 (109-199)||(10276918-10277009)
[»] scaffold0006 (2 HSPs)
scaffold0006 (55-110)||(90144-90199)
scaffold0006 (109-197)||(90029-90119)
[»] chr7 (4 HSPs)
chr7 (2-105)||(24883564-24883667)
chr7 (109-165)||(11676370-11676426)
chr7 (109-192)||(24883449-24883532)
chr7 (56-110)||(11676292-11676345)
[»] scaffold0069 (2 HSPs)
scaffold0069 (55-110)||(11680-11735)
scaffold0069 (109-197)||(11568-11656)
[»] chr2 (2 HSPs)
chr2 (56-125)||(11387890-11387958)
chr2 (109-197)||(23827635-23827724)
[»] scaffold0002 (1 HSPs)
scaffold0002 (109-199)||(356210-356299)


Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 2 - 237
Target Start/End: Complemental strand, 24276454 - 24276217
Alignment:
Q  2 attttgatccaagacattacttaaaaatta--tgtttctttaaaaatatttgagtgaaactaatagaaagataaactgttaaaaataaatcaatagaaaa 99  Q
    ||||||||||||||||||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24276454 attttgatccaagacattacttaaaaattaaatatttctttaaaaatatttgagtgaaactaatagaaagataaactgttaaaaataaatcaatagaaaa 24276355  T
Q  100 ttactccttaataatagaattcaaaagtattttaaaagttacaaatacaacttaatgaaaattaatcttcttttacattgaaaaacgcaatttgcccccg 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  24276354 ttactccttaataatagaattcaaaagtattttaaaagttacaaatacaacttaatgaaaattaatcttcttttacattgaaaaacccaatttgcccccg 24276255  T
Q  200 agtacgcttcaatcacacaacaagctcatatttcatct 237  Q
    ||||||||||||||||||| ||||||||||||| ||||    
T  24276254 agtacgcttcaatcacacatcaagctcatattttatct 24276217  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 42 - 106
Target Start/End: Complemental strand, 16111419 - 16111355
Alignment:
Q  42 aaaatatttgagtgaaactaatagaaagataaactgttaaaaataaatcaatagaaaattactcc 106  Q
    ||||| |||||  ||||||||||||||||| |||| | |||||||||||||||||||||||||||    
T  16111419 aaaatgtttgaacgaaactaatagaaagatgaactttaaaaaataaatcaatagaaaattactcc 16111355  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 197
Target Start/End: Complemental strand, 16111327 - 16111241
Alignment:
Q  109 aataatagaattcaaaagtattttaaaagttacaaatacaacttaatgaaaattaatcttcttttacattgaaaaacgcaatttgcccc 197  Q
    ||||||||| || |||| ||| ||||||||||||| ||||| ||||| ||||||| | ||||||| ||||| | ||| |||||||||||    
T  16111327 aataatagagtttaaaaatatgttaaaagttacaattacaaattaataaaaattagt-ttctttttcattg-ataacccaatttgcccc 16111241  T

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Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 2 - 237
Target Start/End: Original strand, 11165789 - 11166027
Alignment:
Q  2 attttgatccaagacattacttaaaaat--tatgtttctttaaaa-atatttgagtgaaactaatagaaagataaactgttaaaaataaatcaatagaaa 98  Q
    ||||||||||||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  11165789 attttgatccaagacattacttaaaaatgatatgtttctttaaaaaatatttgagtgaaactaatagaaagataaactgttaaaaataaatcaataaaaa 11165888  T
Q  99 attactccttaataatagaattcaaaagtattttaaaagttacaaatacaacttaatgaaaattaatcttcttttacattgaaaaacgcaatttgccccc 198  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11165889 attactccttaataatagaattcaaaagtattttagaagttacaaatacaacttaatgaaaattaatcttcttttacattgaaaaacgcaatttgccccc 11165988  T
Q  199 gagtacgcttcaatcacacaacaagctcatatttcatct 237  Q
     |||||||||| |||||||| ||||||||||||||||||    
T  11165989 aagtacgcttcgatcacacatcaagctcatatttcatct 11166027  T

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Target: chr3 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 2 - 237
Target Start/End: Complemental strand, 5704984 - 5704747
Alignment:
Q  2 attttgatccaagacattacttaaaaattatgtttctttaaaaa--tatttgagtgaaactaatagaaagataaactgttaaaaataaatcaatagaaaa 99  Q
    |||||||||||||||||||||| |||||||| | | |  |||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5704984 attttgatccaagacattactttaaaattatatatttaaaaaaaaatatttgagtgaaactaatagaaagataaactgttaaaaataaatcaatagaaaa 5704885  T
Q  100 ttactccttaataatagaattcaaaagtattttaaaagttacaaatacaacttaatgaaaattaatcttcttttacattgaaaaacgcaatttgcccccg 199  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  |||||||||| ||    
T  5704884 ttactccttaataatagaattcaaaagtattttaaaagttataaatacaacttaatgaaaattaatcttcttttacattgaaaaatccaatttgcccacg 5704785  T
Q  200 agtacgcttcaatcacacaacaagctcatatttcatct 237  Q
    |||| |||||||||||||| ||||||||||||| ||||    
T  5704784 agtatgcttcaatcacacatcaagctcatattttatct 5704747  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 192
Target Start/End: Complemental strand, 16972866 - 16972784
Alignment:
Q  109 aataatagaattcaaaagtattttaaaagttacaaatacaacttaatgaaaattaatcttcttttacattgaaaaacgcaattt 192  Q
    ||||||||| | ||||| |||||||||||||| || ||||| ||||| ||||||||| ||||||| ||||||||| | ||||||    
T  16972866 aataatagagtacaaaaatattttaaaagttataattacaaattaataaaaattaatattctttt-cattgaaaaccccaattt 16972784  T

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Target: scaffold0120 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: scaffold0120
Description:

Target: scaffold0120; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 2 - 237
Target Start/End: Original strand, 1858 - 2097
Alignment:
Q  2 attttgatccaagacattacttaaaaattatgt--ttctttaaaaatatttgagtgaaactaatagaaagataaactgttaaaa--ataaatcaatagaa 97  Q
    ||||| ||||||||||||||||||||||||| |  |||||||||||||||| ||||||||||||||||||||||||||||||||  ||||||||||||||    
T  1858 attttcatccaagacattacttaaaaattatatatttctttaaaaatatttaagtgaaactaatagaaagataaactgttaaaaaaataaatcaatagaa 1957  T
Q  98 aattactccttaataatagaattcaaaagtattttaaaagttacaaatacaacttaatgaaaattaatcttcttttacattgaaaaacgcaatttgcccc 197  Q
    |||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  1958 aattactccttaatacaagaattcaaaagtattttaaaagttacaaatacgacttaatgaaaattaatcttcttttacattgaaaaacccaatttgcccc 2057  T
Q  198 cgagtacgcttcaatcacacaacaagctcatatttcatct 237  Q
     |||||||||||||||||||| | |||||||| |||||||    
T  2058 agagtacgcttcaatcacacatccagctcatacttcatct 2097  T

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Target: chr4 (Bit Score: 94; Significance: 5e-46; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 55 - 192
Target Start/End: Original strand, 16163505 - 16163641
Alignment:
Q  55 gaaactaatagaaagataaactgttaaaaataaatcaatagaaaattactccttaataatagaattcaaaagtattttaaaagttacaaatacaacttaa 154  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||| ||||    
T  16163505 gaaactaatagaaagataaactattaaaaataaatcaatagaaaattactccttaataatagagttcaaaaatattttaaaa-ttacaaatacaaattaa 16163603  T
Q  155 tgaaaattaatcttcttttacattgaaaaacgcaattt 192  Q
    |||||| || ||||||||| ||||||||| | ||||||    
T  16163604 tgaaaactagtcttctttttcattgaaaaccccaattt 16163641  T

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Target: chr4; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 54 - 182
Target Start/End: Original strand, 16167579 - 16167711
Alignment:
Q  54 tgaaactaatagaaagataaactgttaaaaataaatcaatagaaaattactccttaataatagaattcaaaagtattttaaaagttacaaatac-----a 148  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||     |    
T  16167579 tgaaactaatagaaagataaactgttaaaaataaatcaatagaaaattactccttaataatagagttcaaaaatattttaaaa-ttacaaatacaaatta 16167677  T
Q  149 acttaatgaaaattaatcttcttttacattgaaa 182  Q
    | |||||||||| || ||||||||| ||||||||    
T  16167678 aattaatgaaaactagtcttctttttcattgaaa 16167711  T

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Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 109 - 199
Target Start/End: Complemental strand, 10277009 - 10276918
Alignment:
Q  109 aataatagaattcaaaagtattttaaaagttacaaatacaacttaatgaaaattaa-tcttcttttacattgaaaaacgcaatttgcccccg 199  Q
    ||||||||| ||||||| ||||||||||||||| | ||||| ||||||||||  || ||||||||| ||||||||||| |||||||||||||    
T  10277009 aataatagagttcaaaactattttaaaagttactattacaaattaatgaaaaacaagtcttctttttcattgaaaaactcaatttgcccccg 10276918  T

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Target: scaffold0006 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 55 - 110
Target Start/End: Complemental strand, 90199 - 90144
Alignment:
Q  55 gaaactaatagaaagataaactgttaaaaataaatcaatagaaaattactccttaa 110  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  90199 gaaactaatagaaagataaactattaaaaataaatcaatagaaaattactccttaa 90144  T

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Target: scaffold0006; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 197
Target Start/End: Complemental strand, 90119 - 90029
Alignment:
Q  109 aataatagaattcaaaagtattttaaaagttacaaatacaacttaatgaaaa--ttaatcttcttttacattgaaaaacgcaatttgcccc 197  Q
    ||||||||| ||||||| ||||||||||||||||| ||||  |||| |||||   || ||||| ||| ||||||||||| |||| ||||||    
T  90119 aataatagagttcaaaaatattttaaaagttacaattacattttaaagaaaactatagtcttcattttcattgaaaaacccaatctgcccc 90029  T

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Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 2 - 105
Target Start/End: Complemental strand, 24883667 - 24883564
Alignment:
Q  2 attttgatccaagacattacttaaaaattatg-tttctttaaaaatatttgagtgaaactaatagaaagataaactgttaaaaataaatcaatagaaaat 100  Q
    ||||| ||||||||| ||| ||||||||  |  |||||||||||||||||||  ||||||||| |||||||||||| || ||||||||| ||||||||||    
T  24883667 attttcatccaagacgttaattaaaaatattcatttctttaaaaatatttgaacgaaactaatggaaagataaactatt-aaaataaattaatagaaaat 24883569  T
Q  101 tactc 105  Q
    |||||    
T  24883568 tactc 24883564  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 109 - 165
Target Start/End: Original strand, 11676370 - 11676426
Alignment:
Q  109 aataatagaattcaaaagtattttaaaagttacaaatacaacttaatgaaaattaat 165  Q
    ||||||||| ||||||| |||||| |||||||||| ||||| |||||||||||||||    
T  11676370 aataatagagttcaaaaatatttttaaagttacaattacaaattaatgaaaattaat 11676426  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 192
Target Start/End: Complemental strand, 24883532 - 24883449
Alignment:
Q  109 aataatagaattcaaaagtattttaaaagttacaaatacaacttaatgaaaattaatcttcttttacattgaaaaacgcaattt 192  Q
    ||||||||| ||||| | |||||||||| |||||| |||||  |||| |||| |||||| ||||| ||||||||||| ||||||    
T  24883532 aataatagagttcaagaatattttaaaaattacaattacaaaataataaaaactaatctcctttttcattgaaaaacccaattt 24883449  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 110
Target Start/End: Original strand, 11676292 - 11676345
Alignment:
Q  56 aaactaatagaaagataaactgttaaaaataaatcaatagaaaattactccttaa 110  Q
    ||||||||||||||||||||| || ||||||||| ||| ||||||||||| ||||    
T  11676292 aaactaatagaaagataaactatt-aaaataaattaatggaaaattactctttaa 11676345  T

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Target: scaffold0069 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 55 - 110
Target Start/End: Complemental strand, 11735 - 11680
Alignment:
Q  55 gaaactaatagaaagataaactgttaaaaataaatcaatagaaaattactccttaa 110  Q
    |||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||    
T  11735 gaaactaatagaaagacaaactattaaaaataaatcaataaaaaattactccttaa 11680  T

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Target: scaffold0069; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 109 - 197
Target Start/End: Complemental strand, 11656 - 11568
Alignment:
Q  109 aataatagaattcaaaagtattttaaaagttacaaatacaacttaatgaaaattaatcttcttttacattgaaaaacgcaatttgcccc 197  Q
    |||| |||| ||||||| ||||||| ||||||||| ||||  |||| ||||| || ||||| ||| ||||||||||| |||||||||||    
T  11656 aatactagagttcaaaaatattttacaagttacaattacattttaaagaaaactagtcttcattttcattgaaaaacccaatttgcccc 11568  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 56 - 125
Target Start/End: Complemental strand, 11387958 - 11387890
Alignment:
Q  56 aaactaatagaaagataaactgttaaaaataaatcaatagaaaattactccttaataatagaattcaaaa 125  Q
    ||||||||||||||||||| | ||||||| |||||||||||| ||||||| |||||||||||||| ||||    
T  11387958 aaactaatagaaagataaaatattaaaaa-aaatcaatagaagattactcattaataatagaatttaaaa 11387890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 109 - 197
Target Start/End: Original strand, 23827635 - 23827724
Alignment:
Q  109 aataatagaattcaaaagtattttaaaagttacaaatacaacttaatgaaaattaa-tcttcttttacattgaaaaacgcaatttgcccc 197  Q
    ||||||||| ||||||| ||||||||||||||| | ||| | ||||||||||  || ||||||||| ||||||||||| |||||||||||    
T  23827635 aataatagagttcaaaactattttaaaagttactattactaattaatgaaaaacaagtcttctttttcattgaaaaacccaatttgcccc 23827724  T

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Target: scaffold0002 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 109 - 199
Target Start/End: Original strand, 356210 - 356299
Alignment:
Q  109 aataatagaattcaaaagtattttaaaagttacaaatacaacttaatgaaaattaatcttcttttacattgaaaaacgcaatttgcccccg 199  Q
    ||||||||| ||||||  ||||||||||||||||| ||||| ||||| || | |||| ||||||| ||||||||||| ||||||| |||||    
T  356210 aataatagagttcaaatatattttaaaagttacaattacaaattaat-aagactaattttctttttcattgaaaaacccaatttgaccccg 356299  T

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