View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10673_low_1 (Length: 558)
Name: NF10673_low_1
Description: NF10673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10673_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 515; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 20 - 550
Target Start/End: Complemental strand, 45285033 - 45284503
Alignment:
| Q |
20 |
catgatatatctttccttttgttcaatgtcattgtataagtcctttatggcattagaaggagaatcctcagataaagtgagtgtttcatcaaccatttgt |
119 |
Q |
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| T |
45285033 |
catgatatatctttccttttgttcaatgtcattgtataagtcctttatggcattagaaggagaatcctcggataaagtgagtgtttcatcaaccatttgt |
45284934 |
T |
|
| Q |
120 |
ttattttgcaatccatgcagcatatctatattctttctcatatctaccatctcttgttgcgcttgatcattatcttttgtagctaattgaatttcctcgt |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45284933 |
ttattttgcaatccatgcagcatatctatattctttctcatatctactatctcttgttgcgcttgatcattatcttttgtagctaattgaatttcctcgt |
45284834 |
T |
|
| Q |
220 |
ctttctgatacaacattccaatattctgtttctcaactttaatagcagcaagttttgacctgtgaacacgttcattaagctcatttacttgatgcagaag |
319 |
Q |
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| T |
45284833 |
ctttctgatacaacattccaatattctgtttctcaactttaatagcagcaagttttgacctgtgaacacgttcattaagctcatttacttgatgcagaag |
45284734 |
T |
|
| Q |
320 |
ttcttctttctgttccttttccatcttcaactcattttccaactgttccgccttagtgacagcattcaattctgaatctctagcagcaaaaatatcagta |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45284733 |
ttcttctttctgttccttttccatcttcaactcattttccaactgttccgccttagtgacagcattcaattctgaatctctagcagcaaaaatatcagta |
45284634 |
T |
|
| Q |
420 |
tctttgttcagaagctctctttgtgtggccttcaattcactcaaaacatgtgaaagttggtcccgaacttttacagtttctaatctaagatcagccatct |
519 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45284633 |
tctttgttcagaagctctctttgtgtggacttcaattcactcaaaacatgtgaaagttggtcccgaacttttacagtttctaatctaagatcagccatct |
45284534 |
T |
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| Q |
520 |
ctttcatcattgattcaagctcgtctctgct |
550 |
Q |
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| T |
45284533 |
ctttcatcattgattcaagctcgtctttgct |
45284503 |
T |
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