View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10673_low_15 (Length: 215)
Name: NF10673_low_15
Description: NF10673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10673_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 189; Significance: 1e-103; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-103
Query Start/End: Original strand, 2 - 198
Target Start/End: Original strand, 11165365 - 11165561
Alignment:
| Q |
2 |
ttattatcttcaagccacttaaagaccaaatcaactgccttattgatattttccttttcttttgacgaaagcttcgagctaacatctggatcatttatgg |
101 |
Q |
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| T |
11165365 |
ttattatcttcaagccacttaaagaccaaatcaactgcgttattgatattttccttttcttttgacgaaagcttcgagctaacatctggatcatttatgg |
11165464 |
T |
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| Q |
102 |
aatccctcatattgtatgcgtacctctctagttcatttctcgcttcaaccttcttcctatgcctcatgtcttcatctttgtatttctcagcttctct |
198 |
Q |
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| T |
11165465 |
aatccctcatattgtatgcgtacctctctagtgcatttctcgcttcaaccttcttcctatgcctcatgtcttcatctttgtatttctcagcttctct |
11165561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 2 - 208
Target Start/End: Original strand, 11208414 - 11208620
Alignment:
| Q |
2 |
ttattatcttcaagccacttaaagaccaaatcaactgccttattgatattttccttttcttttgacgaaagcttcgagctaacatctggatcatttatgg |
101 |
Q |
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| T |
11208414 |
ttattagcgtcaagccacatgaagaccaaatcaactgcgttattgatcttttccttttcttttgacgaaagcttcgagctaacttctggatcatttatgg |
11208513 |
T |
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| Q |
102 |
aatccctcatattgtatgcgtacctctctagttcatttctcgcttcaaccttcttcctatgcctcatgtcttcatctttgtatttctcagcttctctgct |
201 |
Q |
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| T |
11208514 |
aatccctcatattgtatgcgtacttctctagtgcatttctcgattcaaccttcttcctatgcctcatgtcttcatctttgtatttctcagcttcactgat |
11208613 |
T |
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| Q |
202 |
cctcctc |
208 |
Q |
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| ||||| |
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| T |
11208614 |
catcctc |
11208620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 11 - 198
Target Start/End: Original strand, 11169601 - 11169788
Alignment:
| Q |
11 |
tcaagccacttaaagaccaaatcaactgccttattgatattttccttttcttttgacgaaagcttcgagctaacatctggatcatttatggaatccctca |
110 |
Q |
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|||||||||||||||||||||||| ||| |||||||| ||| |||||||||||||||||| ||||||||||| ||| |||||||||||| | ||||||| |
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| T |
11169601 |
tcaagccacttaaagaccaaatcagttgcgttattgatgtttgccttttcttttgacgaaatcttcgagctaatatccggatcatttatgaattccctca |
11169700 |
T |
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| Q |
111 |
tattgtatgcgtacctctctagttcatttctcgcttcaaccttcttcctatgcctcatgtcttcatctttgtatttctcagcttctct |
198 |
Q |
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| T |
11169701 |
tattgtatgcgtacatctctagtgcatttctcgcttcaaccttcttcctatgcctcatgtcttcatctttgtatttgtcagcttctct |
11169788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 11 - 195
Target Start/End: Original strand, 11274985 - 11275169
Alignment:
| Q |
11 |
tcaagccacttaaagaccaaatcaactgccttattgatattttccttttcttttgacgaaagcttcgagctaacatctggatcatttatggaatccctca |
110 |
Q |
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|||||||||||||||||||||||| ||| |||||||| ||||||||||||||| | |||||||||||| ||| ||| |||||||||||| ||||||||| |
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| T |
11274985 |
tcaagccacttaaagaccaaatcagttgcattattgatgttttccttttcttttaatgaaagcttcgagataatatcgggatcatttatgaaatccctca |
11275084 |
T |
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| Q |
111 |
tattgtatgcgtacctctctagttcatttctcgcttcaaccttcttcctatgcctcatgtcttcatctttgtatttctcagcttc |
195 |
Q |
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| T |
11275085 |
tattgtatgcgtacttctctagtgcatttctcgcttcaacctttttcctatgcctaatgtcttcatctttgtacttctcagcttc |
11275169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 14 - 196
Target Start/End: Original strand, 11155325 - 11155507
Alignment:
| Q |
14 |
agccacttaaagaccaaatcaactgccttattgatattttccttttcttttgacgaaagcttcgagctaacatctggatcatttatggaatccctcatat |
113 |
Q |
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|||||| ||||||||||||||| ||| |||||||| |||||||||||||||||||||||| || | |||| ||| ||||||||| | || |||||| | |
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| T |
11155325 |
agccacgtaaagaccaaatcaagtgcattattgatcttttccttttcttttgacgaaagcatcaaactaatatccttatcatttatagcattcctcatgt |
11155424 |
T |
|
| Q |
114 |
tgtatgcgtacctctctagttcatttctcgcttcaaccttcttcctatgcctcatgtcttcatctttgtatttctcagcttct |
196 |
Q |
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| T |
11155425 |
tgtatgcatacgtctctagtacaactctcgcttctaccttcttcatatacctcttgtcttcatctttgtacttctcagcttct |
11155507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 14 - 196
Target Start/End: Original strand, 11195772 - 11195954
Alignment:
| Q |
14 |
agccacttaaagaccaaatcaactgccttattgatattttccttttcttttgacgaaagcttcgagctaacatctggatcatttatggaatccctcatat |
113 |
Q |
| |
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|||||| | ||||||||||||| ||| |||||||| |||||||||||||||||||||||| || | |||| || ||||||||| | || |||||| | |
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| T |
11195772 |
agccacatgaagaccaaatcaattgctttattgatcttttccttttcttttgacgaaagcatcaaactaatgtccttatcatttatcgcattcctcatgt |
11195871 |
T |
|
| Q |
114 |
tgtatgcgtacctctctagttcatttctcgcttcaaccttcttcctatgcctcatgtcttcatctttgtatttctcagcttct |
196 |
Q |
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||||||| ||| |||||| | ||| ||||||||| | ||||||| ||| |||| |||||||||||||||| |||||||||||| |
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| T |
11195872 |
tgtatgcatacttctctaatacatctctcgcttctagcttcttcatatacctcttgtcttcatctttgtacttctcagcttct |
11195954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 135 - 196
Target Start/End: Original strand, 11132164 - 11132225
Alignment:
| Q |
135 |
catttctcgcttcaaccttcttcctatgcctcatgtcttcatctttgtatttctcagcttct |
196 |
Q |
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||||||| | ||| ||||||||||||| | || |||||||||| ||||| |||||||||||| |
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| T |
11132164 |
catttcttgtttctaccttcttcctatacatcttgtcttcatccttgtacttctcagcttct |
11132225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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