View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10673_low_2 (Length: 486)
Name: NF10673_low_2
Description: NF10673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10673_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 449; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 14 - 470
Target Start/End: Complemental strand, 48537312 - 48536856
Alignment:
| Q |
14 |
aggagaatcatggccaatgacgaaagaaagagcctattttgagtcattggcattgaaagaagagggtaaattgagtcctgatcatgttcctgaagtgtat |
113 |
Q |
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| T |
48537312 |
aggagaatcatggccaatgacgaaagaaagagcctattttgagtcattggcattgaaagaagagggtaaattgagtcctgatcatgttcctgaagtgtat |
48537213 |
T |
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| Q |
114 |
cattttgatcgtactatgtccttgattggtatgcgttatttggagccaccacatataattctcagaaaagggttgattgctggtgttgagtatcctttgt |
213 |
Q |
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| T |
48537212 |
cattttgatcgtactatgtctttgattggtatgcgttatttggagccaccacatataattctcagaaaagggttgattgctggtgttgagtatcctttgt |
48537113 |
T |
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| Q |
214 |
tggctgatcacatgtctgattttatggctaatacactcttctttacttctttgctttaccgttctacgacggagcataaacgggatggtatgaactttcc |
313 |
Q |
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| T |
48537112 |
tggctgatcacatgtctgattttatggctaatacactcttctttacttctttgctttaccgttctacgacggagcataaacgggatggtatgaactttcc |
48537013 |
T |
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| Q |
314 |
cttttcaccttttcataccctcaacatatttatttatttgcaattaaaagtttgttactctaagtctatttgtccaatacagtgtttgaaagcatcgtac |
413 |
Q |
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| T |
48537012 |
cttttcaccttttcataccctcaacatatttatttatttgcaattaaaagtttgttactctaagtctatttgtccaatacagtgtttgaaagcatcgtac |
48536913 |
T |
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| Q |
414 |
tttccctgaaattcaattgagcttgtttttgtattggaaacattggttccttgatgt |
470 |
Q |
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| T |
48536912 |
tttccctgaaattcaattgagcttatttttgtattggaaacattggttccttgatgt |
48536856 |
T |
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