View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10673_low_4 (Length: 441)
Name: NF10673_low_4
Description: NF10673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10673_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 321; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 15 - 430
Target Start/End: Original strand, 8293971 - 8294391
Alignment:
| Q |
15 |
cagtatttttattactaatatttgcaagggacaagtattctgcagtggttcagtgnnnnnnn-taaatacaagtatactagttggaattccnnnnnnn-- |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
8293971 |
cagtatttttattactaatatttgcaagggacaagtattctgcagtggttcagtgaaaaaaaataaatacaagtatactagttggaattccttttttttt |
8294070 |
T |
|
| Q |
112 |
--atatagtgatgtcaagatactttagtgatccttttacatcataatcaaaagaaacttatacttattttaatacactagtgtttgcaacttgcaatgat |
209 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
8294071 |
ttatatagtgatgtcaagacactttagtgatccttttacatcaaaatcaaaagaaacttatacttattttaatacactaatgtttgcaacttgcaatgat |
8294170 |
T |
|
| Q |
210 |
tctgcagtggctcgttgaaatgaaaacggatgagatggnnnnnnncaacacattgataaatctacctgttgatgtgttggaattgattatgaagcgtttt |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8294171 |
tctgcagtggctcgttgaaatgaaaacggatgagatggaaaaaaacaacacattgataaatctacctgttgatgtgttggaattgattatgaagcgtttt |
8294270 |
T |
|
| Q |
310 |
ccccttaaagattgccttagattacgagcaatatgccgttcttgtaggaaaacacaatttctaatgtcattgaaaacaagcattgctgccatgcatttac |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8294271 |
ccccttaaagattgccttagattacgagcaatatgccgttcttgtaggaaaacacaatttctaatgtcattgaaaacaagcattgctgccatgcatttac |
8294370 |
T |
|
| Q |
410 |
ctgaattgccactagtttcat |
430 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
8294371 |
ctgaattgccactagtttcat |
8294391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 261 - 427
Target Start/End: Original strand, 30148693 - 30148856
Alignment:
| Q |
261 |
attgataaatctacctgttgatgtgttggaattgattat---gaagcgttttccccttaaagattgccttagattacgagcaatatgccgttcttgtagg |
357 |
Q |
| |
|
||||| ||||||||| || ||||||||||||||||| || ||| || || |||||||||||||| ||| ||||| | |||| || |||||||||||| |
|
|
| T |
30148693 |
attgacaaatctaccggtcgatgtgttggaattgatgattctgaaccgcttgccccttaaagattggcttggattaagggcaacctgtcgttcttgtagg |
30148792 |
T |
|
| Q |
358 |
aaaacacaatttctaatgtcattgaaaacaagcattgctgccatgcatttacctgaattgccactagttt |
427 |
Q |
| |
|
||| ||| |||||||| ||||||||||||||| ||||||| |||||||||||| ||||| |||||| |
|
|
| T |
30148793 |
aaa--acagtttctaatttcattgaaaacaagcgttgctgc----catttacctgaactgccattagttt |
30148856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 261 - 427
Target Start/End: Original strand, 30153414 - 30153577
Alignment:
| Q |
261 |
attgataaatctacctgttgatgtgttggaattgattat---gaagcgttttccccttaaagattgccttagattacgagcaatatgccgttcttgtagg |
357 |
Q |
| |
|
||||| ||||||||| || ||||||||||||||||| || ||| || || |||||||||||||| ||| ||||| | |||| || |||||||||||| |
|
|
| T |
30153414 |
attgacaaatctaccggtcgatgtgttggaattgatgattctgaaccgcttgccccttaaagattggcttggattaagggcaacctgtcgttcttgtagg |
30153513 |
T |
|
| Q |
358 |
aaaacacaatttctaatgtcattgaaaacaagcattgctgccatgcatttacctgaattgccactagttt |
427 |
Q |
| |
|
||| ||| |||||||| ||||||||||||||| |||||| |||||||||||| ||||| |||||| |
|
|
| T |
30153514 |
aaa--acagtttctaatttcattgaaaacaagcgttgctg----tcatttacctgaactgccattagttt |
30153577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 269 - 399
Target Start/End: Complemental strand, 25741476 - 25741348
Alignment:
| Q |
269 |
atctacctgttgatgtgttggaattgattatgaagcgttttccccttaaagattgccttagattacgagcaatatgccgttcttgtaggaaaacacaatt |
368 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| || |||||||||| ||||||||| ||||||| |||||||||||||||||| | | || |
|
|
| T |
25741476 |
atctacccgttgatgtgttggaattgattatgaagcgtttgcctcttaaagattaccttagattgagagcaatttgccgttcttgtaggaaa--atagtt |
25741379 |
T |
|
| Q |
369 |
tctaatgtcattgaaaacaagcattgctgcc |
399 |
Q |
| |
|
|| ||| ||||||||||||| |||||||||| |
|
|
| T |
25741378 |
tcgaatatcattgaaaacaaacattgctgcc |
25741348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 261 - 399
Target Start/End: Complemental strand, 25756222 - 25756086
Alignment:
| Q |
261 |
attgataaatctacctgttgatgtgttggaattgattatgaagcgttttccccttaaagattgccttagattacgagcaatatgccgttcttgtaggaaa |
360 |
Q |
| |
|
||||| ||||||||| ||||||||||||||| |||||||||||||||| || |||||||||| ||||||||| ||||||| |||||||||||| || || |
|
|
| T |
25756222 |
attgacaaatctaccagttgatgtgttggaaatgattatgaagcgtttgcctcttaaagattaccttagattgagagcaatttgccgttcttgtcgggaa |
25756123 |
T |
|
| Q |
361 |
acacaatttctaatgtcattgaaaacaagcattgctgcc |
399 |
Q |
| |
|
||| |||| ||| |||||||||||||||||||||||| |
|
|
| T |
25756122 |
--acagtttccaatatcattgaaaacaagcattgctgcc |
25756086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 192 - 427
Target Start/End: Complemental strand, 40462885 - 40462655
Alignment:
| Q |
192 |
tttgcaacttgcaatgattctgcagtggctcgttgaaatgaaaacggatgagatggnnnnnnnca-acacattgataaatctacctgttgatgtgttgga |
290 |
Q |
| |
|
||||||| |||||||||||||||||| |||| |||||| |||| ||||||||| | ||||||||| ||||||||| || |||||||| || |
|
|
| T |
40462885 |
tttgcaagttgcaatgattctgcagtagctcaatgaaataaaaaattatgagatggaaggaaaaacacacattgacaaatctaccagtcgatgtgtttga |
40462786 |
T |
|
| Q |
291 |
attgattatgaagcgttttccccttaaagattgccttagattacgagcaatatgccgttcttgtaggaaaacacaatttctaatgtcattgaaaacaagc |
390 |
Q |
| |
|
|||||| |||||||||| ||||||| |||||||||| | ||| |||||||||| |||||||| |||||||| |||||||||||||||||||||| | |
|
|
| T |
40462785 |
gttgattctgaagcgtttgccccttagagattgccttggtttaagagcaatatgtcgttcttgcaggaaaactg--tttctaatgtcattgaaaacaaac |
40462688 |
T |
|
| Q |
391 |
attgctgccatgcatttacctgaattgccactagttt |
427 |
Q |
| |
|
||| |||| |||||||||||| |||||||||||| |
|
|
| T |
40462687 |
attactgc----catttacctgaactgccactagttt |
40462655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 269 - 399
Target Start/End: Complemental strand, 25733775 - 25733647
Alignment:
| Q |
269 |
atctacctgttgatgtgttggaattgattatgaagcgttttccccttaaagattgccttagattacgagcaatatgccgttcttgtaggaaaacacaatt |
368 |
Q |
| |
|
||||||| | ||||||||||||| |||||||||||||||| ||||| ||||||| ||||||||| ||||||| |||||||||||||||||| | | || |
|
|
| T |
25733775 |
atctacccgctgatgtgttggaactgattatgaagcgtttgcccctaaaagattaccttagattgagagcaatttgccgttcttgtaggaaa--atagtt |
25733678 |
T |
|
| Q |
369 |
tctaatgtcattgaaaacaagcattgctgcc |
399 |
Q |
| |
|
|| ||| |||||||||||||||||||||||| |
|
|
| T |
25733677 |
tcgaatatcattgaaaacaagcattgctgcc |
25733647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 261 - 399
Target Start/End: Complemental strand, 25747654 - 25747518
Alignment:
| Q |
261 |
attgataaatctacctgttgatgtgttggaattgattatgaagcgttttccccttaaagattgccttagattacgagcaatatgccgttcttgtaggaaa |
360 |
Q |
| |
|
||||| ||||||||| || ||||||||||| |||||||||||||||| || |||||||||| ||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
25747654 |
attgacaaatctaccagtcgatgtgttggagatgattatgaagcgtttgcctcttaaagattaccttagattgagagcaatttgccgttcttgtaggaaa |
25747555 |
T |
|
| Q |
361 |
acacaatttctaatgtcattgaaaacaagcattgctgcc |
399 |
Q |
| |
|
|| |||| || | |||||||||||||||||||||| |
|
|
| T |
25747554 |
--acggtttccaaaatgattgaaaacaagcattgctgcc |
25747518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 256 - 396
Target Start/End: Complemental strand, 25764180 - 25764042
Alignment:
| Q |
256 |
aacacattgataaatctacctgttgatgtgttggaattgattatgaagcgttttccccttaaagattgccttagattacgagcaatatgccgttcttgta |
355 |
Q |
| |
|
|||| ||||| ||||||||| ||||||||||||||| ||||||||||||||| || |||||||||| ||||||||| |||| || || ||||||||| |
|
|
| T |
25764180 |
aacatattgacaaatctaccagttgatgtgttggaacggattatgaagcgtttgcctcttaaagattaccttagattgagagcgatttgtcgttcttgtc |
25764081 |
T |
|
| Q |
356 |
ggaaaacacaatttctaatgtcattgaaaacaagcattgct |
396 |
Q |
| |
|
|| || ||| |||| ||| ||||||||||||||||||||| |
|
|
| T |
25764080 |
gggaa--acagtttccaatatcattgaaaacaagcattgct |
25764042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University