View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10673_low_5 (Length: 440)
Name: NF10673_low_5
Description: NF10673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10673_low_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 423
Target Start/End: Original strand, 11683814 - 11684236
Alignment:
| Q |
1 |
agaagaccactgctctaacatcttcaaacatttcaacccacttgcaaccttcgctcatgcccttggcattcacccttatgagttggtacctgagatatca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11683814 |
agaagaccactgctctaacatcttcaaacatttcaacccacttgcaaccttcgctcatgcccttggcattcacccttatgagttggtacctgagatatca |
11683913 |
T |
|
| Q |
101 |
aagaaatgttgttaatatgtacttaatatgaaccacttttttcgtactagatattcaatatgcttacttggtcattggttgcaactgagcatcaaggtta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11683914 |
aagaaatgttgttaatatgtacttaatatgaaccacttttttcgtcctcgatattcaatatgcttacttggtcattggttgcaactgagcatcaaggtta |
11684013 |
T |
|
| Q |
201 |
tctgtataagcatcgaactttgggctacgatcatcgagcgagaattccatgaaagccaaaccatttccctgagtaaccccttctgcatatagtatgtccc |
300 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11684014 |
tctgtataagcatcaaactttgggctacgatcatcgagcgagaattccatgaaagccaaaccatttccctgagtaaccccttctgcatatagtatgtccc |
11684113 |
T |
|
| Q |
301 |
tttcagaaggttcataatcattgctagatatctcaacagcctggaagtnnnnnnncgagcacattatctaggtacacgagtcaataccttaatctctcca |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
11684114 |
tttcagaaggttcataatcattgctagatatctcaacagcctggaagtaaaaaaacgagcacattatctaggtacacaagtcaataccttaatctctcca |
11684213 |
T |
|
| Q |
401 |
aggcagaaaatgaaaacattgct |
423 |
Q |
| |
|
| ||||||||||||||||||||| |
|
|
| T |
11684214 |
acgcagaaaatgaaaacattgct |
11684236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 331
Target Start/End: Original strand, 26407153 - 26407238
Alignment:
| Q |
246 |
tccatgaaagccaaaccatttccctgagtaaccccttctgcatatagtatgtccctttcagaaggttcataatcattgctagatat |
331 |
Q |
| |
|
||||||||||| | |||||| | ||| ||||| ||||| ||||||| ||| ||| | |||||||||||||| || ||||| ||||| |
|
|
| T |
26407153 |
tccatgaaagcaagaccattgctctgtgtaactccttcagcatataatatatccttatcagaaggttcatactcgttgcttgatat |
26407238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University