View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10673_low_6 (Length: 393)
Name: NF10673_low_6
Description: NF10673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10673_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 19 - 378
Target Start/End: Complemental strand, 30717495 - 30717139
Alignment:
| Q |
19 |
cacagagccgtagtctcattcctgaaacttttaagcgtaagctagaagctgcaaaattggtgcccaggcgtaacaggagcagtattcaatctcttcaatc |
118 |
Q |
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| T |
30717495 |
cacagagccgtagtctcactcctgaaacttttaagcgtaagctagaagctgcaaaattggtgccgaggcgtaagaggagcagtattcaatctcttcaatc |
30717396 |
T |
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| Q |
119 |
ttccgtgtcaattgttgattctgcttcgtgctgagtaaatgactcaatcattctcttgcttttctctcttacagttatagacttatagtatatgtgttgt |
218 |
Q |
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| T |
30717395 |
ttccgtgtcaattgttgattctgcttcgtgctgagtaaatgactcaatcattctcttgcttttctctcttacagttatagacttatagtatatgtgttgt |
30717296 |
T |
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| Q |
219 |
gttgttgatccatttaaccaattctaggtttggattatgaagatgtaaagagagtgaatgtgatgcttcatactatatcagtaaattttacattgagttc |
318 |
Q |
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| T |
30717295 |
gttgttgatccatttaaccaattctaggtttggattatgaagatgtaaagatagtgaatgtgatgcttcatactatatcagtaaattttacattgagttc |
30717196 |
T |
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| Q |
319 |
tttccctgagataagaatagttctgttctgtttgttgtatgcttgatatacccttatttt |
378 |
Q |
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| T |
30717195 |
tttccctgagataagaatagttct-ttctgtttgttgtatgcttg--atacccttatttt |
30717139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 31 - 146
Target Start/End: Original strand, 30894726 - 30894841
Alignment:
| Q |
31 |
gtctcattcctgaaacttttaagcgtaagctagaagctgcaaaattggtgcccaggcgtaacaggagcagtattcaatctcttcaatcttccgtgtcaat |
130 |
Q |
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| T |
30894726 |
gtctcattcctgaaacttctaagcgtaagctagaagctacaaaattggtgccaaggcgtaagaggagcagtattcaatctcttcactcttccgcttcgat |
30894825 |
T |
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| Q |
131 |
tgttgattctgcttcg |
146 |
Q |
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| T |
30894826 |
tgttgattctgcttcg |
30894841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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