View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10673_low_9 (Length: 252)
Name: NF10673_low_9
Description: NF10673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10673_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 5 - 236
Target Start/End: Complemental strand, 34127361 - 34127130
Alignment:
| Q |
5 |
tccatcatcgaagccgaaggaattcccgaaattgacctctcaccaatattccaccatgaagttcaagatcaatctgctattgatagcttggtgaagaaga |
104 |
Q |
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| T |
34127361 |
tccatcattgaagccgaaggaattcccgaaattgacctctcaccaatattccaccatgaagttcaagatcaatctgctattgatagcttggtgaagaaga |
34127262 |
T |
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| Q |
105 |
ttggaagtgcatgcaaggaatggggcttctttcaagttacaaaccatgaggtccctttgagtattaggcaaagacttgatgaagctgctagattgttctt |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34127261 |
ttggaagtgcatgcaaggaatggggcttctttcaagttacaaaccatgaggtccctttgagtattaggcaaagacttgatgaagctgctagattgttctt |
34127162 |
T |
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| Q |
205 |
tgctcaaattttggaggagaaaatgaaggttg |
236 |
Q |
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| T |
34127161 |
tgctcaaagtttggaggagaaaatgaaggttg |
34127130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 34133638 - 34133403
Alignment:
| Q |
1 |
actctccatcatcgaagccgaaggaattcccgaaattgacctctcaccaatattccaccatgaagttcaagatcaatctgctattgatagcttggtgaag |
100 |
Q |
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| T |
34133638 |
actctccatcatcgaagccaaaggaattcccgaaattgacctctctccaattcttcaccatgcagttccaaatccatctgatattgaaaacttggtgaag |
34133539 |
T |
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| Q |
101 |
aagattggaagtgcatgcaaggaatggggcttctttcaagttacaaaccatgaggtccctttgagtattaggcaaagacttgatgaagctgctagattgt |
200 |
Q |
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| T |
34133538 |
gagattggaagtgcaagcaaggagtggggtttctttcaagtcacaaaccatggagtccctttgagtctaaggcagagacttgaggaagcttctagattgt |
34133439 |
T |
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| Q |
201 |
tctttgctcaaattttggaggagaaaatgaaggttg |
236 |
Q |
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| T |
34133438 |
tctttgctcagagtttggaggagaagaagaaggttg |
34133403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 34137549 - 34137314
Alignment:
| Q |
1 |
actctccatcatcgaagccgaaggaattcccgaaattgacctctcaccaatattccaccatgaagttcaagatcaatctgctattgatagcttggtgaag |
100 |
Q |
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|||||| ||||| |||||| |||||||||||| |||||||||||| |||||||||||| ||||||||| | ||| ||||| |||||| | ||| |||||| |
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| T |
34137549 |
actctcaatcattgaagccaaaggaattcccgtaattgacctctctccaatattccacaatgaagttccaaatccatctgatattgaaaacttagtgaag |
34137450 |
T |
|
| Q |
101 |
aagattggaagtgcatgcaaggaatggggcttctttcaagttacaaaccatgaggtccctttgagtattaggcaaagacttgatgaagctgctagattgt |
200 |
Q |
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| T |
34137449 |
gaaattggaagtgcatgcaaagagtggggtttcttccaagtcacaaaccatggagtcccttcgagtcttaggcagagacttgatgaagctgctaaattgt |
34137350 |
T |
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| Q |
201 |
tctttgctcaaattttggaggagaaaatgaaggttg |
236 |
Q |
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| T |
34137349 |
tctttgctcagagtttggaggagaagaggaaggttg |
34137314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 34141212 - 34140977
Alignment:
| Q |
1 |
actctccatcatcgaagccgaaggaattcccgaaattgacctctcaccaatattccaccatgaagttcaagatcaatctgctattgatagcttggtgaag |
100 |
Q |
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||||||| |||| |||||| |||| ||||| |||||||| ||||| |||||||||||| ||||||||| | ||| |||||||||||| ||||| || ||| |
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| T |
34141212 |
actctccctcatagaagccaaaggtattccagaaattgatctctctccaatattccacaatgaagttccaaatccatctgctattgaaagcttagtcaag |
34141113 |
T |
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| Q |
101 |
aagattggaagtgcatgcaaggaatggggcttctttcaagttacaaaccatgaggtccctttgagtattaggcaaagacttgatgaagctgctagattgt |
200 |
Q |
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||||||||||||||||||| | ||||| |||||| |||| |||||||||| |||||||||||| | ||||| || |||||||||||||||||||||| |
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| T |
34141112 |
gagattggaagtgcatgcaaagcgtggggattctttaaagtcacaaaccatggagtccctttgagtctcaggcagaggcttgatgaagctgctagattgt |
34141013 |
T |
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| Q |
201 |
tctttgctcaaattttggaggagaaaatgaaggttg |
236 |
Q |
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|||||||||| | |||||||||||| | |||||||| |
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| T |
34141012 |
tctttgctcagagtttggaggagaagaagaaggttg |
34140977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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