View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10674_high_3 (Length: 227)
Name: NF10674_high_3
Description: NF10674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10674_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 48056602 - 48056383
Alignment:
| Q |
1 |
agggatgatattggtgcgtgtctgtgtcatactagtttttcattttggaacagcttttaataaaatcatatgataacttggtttaccatcaaaggtatca |
100 |
Q |
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| T |
48056602 |
agggatgatattggtgcgtgtctgtgtcatactagttttttattttggaacagcttttaataaaatcatatgataacttggtttaccatcaaaggtatca |
48056503 |
T |
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| Q |
101 |
aagagagtctacttacttatataccattcagattcacaatattcttcatagaccaacatgtttttcagccaacaccaacaaacaatactcatgtgttcca |
200 |
Q |
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| T |
48056502 |
aagagagtctacttacttatataccattcagattcacaatattcttcatagaccaacatgtttttcagccaacaccaacaaacaatactcatgtgttcca |
48056403 |
T |
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| Q |
201 |
ggcttccagcattcttctca |
220 |
Q |
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| T |
48056402 |
ggcttccagcattcatctca |
48056383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 73 - 201
Target Start/End: Complemental strand, 48043304 - 48043173
Alignment:
| Q |
73 |
ataacttggtttaccatcaaaggtatcaaagagagtct---acttacttatataccattcagattcacaatattcttcatagaccaacatgtttttcagc |
169 |
Q |
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| T |
48043304 |
ataactaggtttaccaacaaaggtatcaaagagagtattatacttatttacctaccatacaggttcacaatattcttcaatggccaacatgtttttcagc |
48043205 |
T |
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| Q |
170 |
caacaccaacaaacaatactcatgtgttccag |
201 |
Q |
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| T |
48043204 |
caacaccaatacacagtattcatgtgttccag |
48043173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 71 - 201
Target Start/End: Complemental strand, 48051207 - 48051078
Alignment:
| Q |
71 |
tgataacttggtttaccatcaaaggtatcaaagagagtctacttacttatataccattcagattcacaatattcttcatagaccaacatgtttttcagcc |
170 |
Q |
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| T |
48051207 |
tgatagcttggtttaccaacaaaggtatcaaagagagtattat-acttatttaccattcaggttcacaacattcttcaatggccaacatgtttttcagca |
48051109 |
T |
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| Q |
171 |
aacaccaacaaacaatactcatgtgttccag |
201 |
Q |
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| T |
48051108 |
accaccaatacacattattcatgtattccag |
48051078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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