View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10674_low_1 (Length: 392)
Name: NF10674_low_1
Description: NF10674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10674_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 20 - 382
Target Start/End: Original strand, 48115149 - 48115516
Alignment:
| Q |
20 |
aattcttcttttcttccatactcttattttcatgtcctatcttattcaatgtgtttctcttaactgttatataaaacatcttacttttcttctcaatgaa |
119 |
Q |
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| T |
48115149 |
aattcttctttgcttccatactcttattttcatgtcctatcttattcaatgtgtttctcttaactgttatataaaacatcttacttttcttctcaatgaa |
48115248 |
T |
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| Q |
120 |
acagaataaaaa-gatttaaagctatatgagttggacagaaaatccatgtgactgtattccttattgtttgcctaag----taagtaattcggtcattat |
214 |
Q |
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| T |
48115249 |
acagaataaaaaagatttaaagctatatgagttggacagaaaatccatgtgactgtattccctattgtttgcctaagtaagtaagtaattcggtcattat |
48115348 |
T |
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| Q |
215 |
tcctaggtactctgaatttcttcttcctcacatgttttgtccatctttcgataccaaacaaaccactaaataaaatctcaatcattaaccaaatcaaaac |
314 |
Q |
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| T |
48115349 |
tcctaggtactctgaatttcttcttcctcacatgttttgtccatctttcgataccaaacaaaccactaaataaaatctcaatcattaaccaaatcaaaac |
48115448 |
T |
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| Q |
315 |
aataccatggatctaccacacgattcacataattatatgtctttacttgccacgatcaatattctctg |
382 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
48115449 |
aataccatggatctaccacacgattcacataattatatgtcttttcttgccacgatcaatattctctg |
48115516 |
T |
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