View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10674_low_2 (Length: 355)
Name: NF10674_low_2
Description: NF10674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10674_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 45676093 - 45675754
Alignment:
| Q |
1 |
ttggtagcaacacattcttttacacaattttcgacactccttctatttattaaaatttacgtgagtttcatcaaatttatgtgaaactcatataattttt |
100 |
Q |
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| T |
45676093 |
ttggtagcaacacattcttttacacaattttcgacactccttctatttattaaaatttacgtgagtttcatcaaatttatgtggaactcatataattttt |
45675994 |
T |
|
| Q |
101 |
atgggacagacaacccgattaaagagcgtgtattgaaaaatgtatgttaaaacgtgtgttgctaacacttttcactacagaaataaacacatacccgata |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
45675993 |
atgggacagacaacccgattaaagagcgtgtattgaaaaatatatgttaaaacgtgtgttgctaacacttttcacaacagaaataaacacatacccgata |
45675894 |
T |
|
| Q |
201 |
gtgaagatcattgagttgatcaagcatgaattgagtctgaaaaattccaacatgttaaaatctatccaaagttgataaaaaatgccattcatctctctca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |
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| T |
45675893 |
gtgaagatcattgagttgatcaagcatgaattgagtctgaaaaattccaacatgttaaaatctatccaaagttgatcaaaaataccattcatctctctca |
45675794 |
T |
|
| Q |
301 |
aagtttcatcaacaattagttgactctatttagtggaata |
340 |
Q |
| |
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| T |
45675793 |
aagtttcatcaacaattatctgactctatttagtggaata |
45675754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 164
Target Start/End: Original strand, 40694732 - 40694768
Alignment:
| Q |
128 |
gtgtattgaaaaatgtatgttaaaacgtgtgttgcta |
164 |
Q |
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| T |
40694732 |
gtgtattgaaaagtgtgtgttaaaacgtgtgttgcta |
40694768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 164
Target Start/End: Complemental strand, 12703492 - 12703456
Alignment:
| Q |
128 |
gtgtattgaaaaatgtatgttaaaacgtgtgttgcta |
164 |
Q |
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|||||||||||||||| |||||||| ||||||||||| |
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| T |
12703492 |
gtgtattgaaaaatgtgtgttaaaatgtgtgttgcta |
12703456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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